XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACAG
ATTTACCAACTGCAGAATTTACTCAAACCCATAAATATTGAATAAAGAGT
AGGTCATTTAAGATGTCTGATGGGAAATTTAAATTTTTATTGGATTAAAT
AAAGATGAACACATAACCTCCAGAGACATGTGCACAAAAATTGTAATGAG
GACAATTTGTATCAATGAGATACAAGGAATGAGATTAAAGGAAATAAAGG
TCTCAAACAAAGAACATTACATGGCATCTAAGGAACTTAGAAAAGCAAGA
ACAAGCCAAGGGTAGAAAGCATCTTTAATTTCACCACTTAGAAGGAAGAG
GCCAGCGGATCTCTATCCTCAAGGCATGCCTGAGCTACAAAGAGAGTCCC
AGGATATCTAGGGCTACACATAGAAACTCTGACTCTAACACCTGTCACCT
CAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATAA
AATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA
AGGAAGGGTAGAGTTTAGGGGAGACTCCACATTTAGGGCTGGCTACCTAA
TGTATTTAATATCATCTATCTGCCAGGTTGCCCTTCCACTCATACTCAAA
GGCACTGTGGCAGGCTCAACTAAATTGCCTTGATTCTACTTGAAAATCTG
CCTTAATATTTTCCTCTTTCCCCTTTCACCTTTCTTTTA

GGGGATGGCCAGATGGNAGNAGGCTGTTTGTTAGTGAGGTAGGGAAGGNN
NNNNNNNCGCCCCNNAGNTCCCCATGAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTA
CATACAAATTGATCTTTCTAATTAGACTGTTGTTGTGTATTACTTTACAT
AAATTTCTTGTCATTTTTCACTTTTAATAAATTTCAGTTTAGTTTACTTG
TGTGGAAACTATGAAAATTCCATCATACTTAGTATGCACGTGAAGAATTA
AAAAAAAAAATAATGACTGCCCTGAGAACATGAGCCCCGGCCAGATGGCC
TAATTCCCCAGAACTTTTGGGAAAAACAACCACAGAATGTTTCAATGTCC
CAGGTGCCTCTGGAACCTTAAAGTTTTTACATTTCTATAAAATTCACTTG
CTAAGTGCTATAGTGTATAATGTGAGTTAAAAATGTTGATCTCTCTTACT
TCATAAATAAACAGGTATTAAATCTACTTAAATAATGAAACCCACTGAGA
AGAATTTGAAACATTTCTAAATTATATTTCATCAATTTATATAATTTGGG
GGAGAAACTGTAGTATGTTTATTTGAAAGTGGAGGCATGCCCAGCAGTTC
GGCAAAGAACACACGTTTGCCTGAATAGGATAGATATTAATGGGGGGTAA
GTTTTGTGATGAGACCGAGGCTTTACGACTACGCCCTGTCGATGTTGAAT
AATTAATTATGGATAGTTATATACCAGGTATGGATCGGGACGCTTTATTC
CGTTTTGTTTTCCCCTTTTTT

Query= MSMg01no416_e06.b1 MSMg01no416_e06.b1 CHROMAT_FILE:
MSMg01no416_e06.b1 PHD_FILE: MSMg01no416_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:51 2005
         (558 letters)



>mm_chr1_27828496_27829453
          Length = 958

 Score =  783 bits (405), Expect = 0.0
 Identities = 453/469 (96%), Gaps = 1/469 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  aactgcagaatttactcaaacccataaatattgaataaagagtaggtcatttaagatgtc 82
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 468 aactgcagaatttactcaaacccatgaatattgaataaagagtaggtcatttaagatgtc 409

                                                                       
Query: 83  tgatgggaaatttaaatttttattggattaaataaagatgaacacataacctccagagac 142
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgatgggaaatataaatttttattggattaaataaagatgaacacataacctccagagac 349

                                                                       
Query: 143 atgtgcacaaaaattgtaatgaggacaatttgtatcaatgagatacaaggaatgagatta 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atgtgcacaaaaattgtaatgaggacaatttgtatcaatgagatacaaggaatgagatta 289

                                                                       
Query: 203 aaggaaataaaggtctcaaacaaagaacattacatggcatctaaggaacttagaaaagca 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaggaaataaaggtctcaaacaaagaacattacatggcatctaaggaacttagaaaagca 229

                                                                       
Query: 263 agaacaagccaagggtagaaagcatctttaatttcaccacttagaaggaagaggccagcg 322
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 228 agaacaagccaagggtagagagcatctttaatttcaccacttagaaggaaggggccagcg 169

                                                                       
Query: 323 gatctctatcctcaaggcatgcctgagctacaaagagagtcccaggatatctagggctac 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gatctctatcctcaaggcatgcctgagctacaaagagagtcccaggatatctagggctac 109

                                                                       
Query: 383 acatagaaactctgactctaacacctgtcacctcaatcaatcaatcaatcaatcaatcaa 442
           ||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||| ||
Sbjct: 108 acatagaaactctgactctaacacctgtcacctcaataaataaataaataaataaataaa 49

                                                            
Query: 443 tcaatcaatcaatcaatcaataaaataaaataaaataaaataaaataaa 491
           | ||| ||| ||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 48  taaataaataaataaataaataaa-taaaataaaataaaataaaataaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)