BAC Information

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BAC

Clone NameMSMg01-417B04
Chromosome1 (Build37)
Map Location 38,334,193 - 38,334,623
singlet/doubletsinglet
Overlap geneAff3
Upstream geneInpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417B04.T7 (MSMg01no417_b04.b1)MSMg01-417B04.TJ (MSMg01no417_b04.g1)
ACCAG512740AG512741
length744746
length of high quality
(start - end)
514 (55 - 568)495 (78 - 572)
definitionCHROMAT_FILE: MSMg01no417_b04.b1 PHD_FILE: MSMg01no417_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:50 2005CHROMAT_FILE: MSMg01no417_b04.g1 PHD_FILE: MSMg01no417_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAATGATAATGAAAGCACAACATAGCTAAATTTATAG
GACACAATGAAAGCAGTGCTAAGAGTAAAGTTCATAGCAATTAGGTACCT
CCATAAAGAAATGAGAAAATTCTCAGCCAGGCGGTGGTGGCGCACGCCTT
TAATCCCAGCATTTGAGAACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG
TTTGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGCTAC
ACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAGAAAGAAAAG
AAAAAGAAAAAAAAAGAAATTAGAAAATTCTCATATCAGCAATTCAAAAG
TACACCTGAAAGCTCTAGAAAAATAAGAAGTAAGCCCACCAAAGAGTAGA
GGGCAAAAATTAATCAACATCAGGACTAAAATCAATCAGTTAGAAACAAA
GAAACACTACAAAAAAATCCATGAAGCCAAGAGCTGGTTCTTTGAAAAAC
AAGGAACAAAATAGACAAACTCTTAGCCAAACTAACCAAGAGACAAGACA
GACAGTATCCAAATAAAATCAGTAATGAANAGGGAAACATAACAACTGAC
ACTGAGGAAAATCAAAGAATCATTGGGTCTTATTTCCAAAAGCTGTATTC
CACAAATTGGGATATTGAAATGTATGATTTTTCTATAAGACATC
CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAATTACATCACAGTCTCTCAG
CTAATTAGTTGGTAATGATGAGGTCATGCGTATCCTAGGCTCTGAGGAAA
CACAGCATTGTCCTTTTCTTCCTTACTTTAAAATGCCAGAGAAAAGGCGG
GCGTGGTGGCGCATGCCTTTAATCCCAGAACTCGGGAGGCAGAGGCAGGC
GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA
GCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAATTAAAAAAATAAAA
ATGCCAGAGGAATGGAACTGAGGGGCGTTGTGTGCTAAGCAAGTTCCCCA
CCACTGAGGCGTGTATTATGGCATCCCGAGCCATAATACATGCTTATTCA
AATATTCGATTATTTAAACAGAAGGTGAGGGAAAGGTAGAGGCAGGTGAG
TCAATATACAATTCCAATATGCATGGTGTGCTAGTTGTTCACAAAATTGT
GTACAGAATGAGCCATTTGTCTGTCAGTGAGTTAGTGGTAGTGTCTGTAC
AATAGTGAGGTCGTTATCCGGTAGGAAATAATATCGTGAGTCTCACCCTG
CGCTTGTGTTCTGTAAGAAGACTGTGCCTCTCCCGTTTTAAATTTTGTAA
ACCATTATCTTATTAAGAACCTATTCTAAGGCCGGCATTATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_b04.g1 MSMg01no417_b04.g1 CHROMAT_FILE:
MSMg01no417_b04.g1 PHD_FILE: MSMg01no417_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:50 2005
         (495 letters)



>mm_chr1_38333729_38334623
          Length = 895

 Score =  733 bits (379), Expect = 0.0
 Identities = 419/443 (94%), Gaps = 18/443 (4%)
 Strand = Plus / Minus

                                                                       
Query: 59  taggctctgaggaaacacagcattgtccttttcttccttactttaaaatgccagagaaaa 118
           |||||||||||||||||||||||||||||||||||||||||            |||||||
Sbjct: 895 taggctctgaggaaacacagcattgtccttttcttccttac------------gagaaaa 848

                                                                       
Query: 119 ggcgggcgtggtggcgcatgcctttaatcccagaactcgggaggcagaggcaggcggatt 178
           ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ggcgggcatggtggcacacgcctttaatcccagaactcgggaggcagaggcaggcggatt 788

                                                                       
Query: 179 tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 787 tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggactatacag 728

                                                                       
Query: 239 agaaaccctgtctcaaaaaaattaa------aaaaataaaaatgccagaggaatggaact 292
           |||||||||||||||||||||||||      |||||||||||||||||||||||||||||
Sbjct: 727 agaaaccctgtctcaaaaaaattaaaaaaataaaaataaaaatgccagaggaatggaact 668

                                                                       
Query: 293 gaggggcgttgtgtgctaagcaagttccccaccactgaggcgtgtattatggcatcccga 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaggggcgttgtgtgctaagcaagttccccaccactgaggcgtgtattatggcatcccga 608

                                                                       
Query: 353 gccataatacatgcttattcaaatattcgattatttaaacagaaggtgagggaaaggtag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gccataatacatgcttattcaaatattcgattatttaaacagaaggtgagggaaaggtag 548

                                                                       
Query: 413 aggcaggtgagtcaatatacaattccaatatgcatggtgtgctagttgttcacaaaattg 472
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agacaggtgagtcaatatacaattccaatatgcatggtgtgctagttgttcacaaaattg 488

                                  
Query: 473 tgtacagaatgagccatttgtct 495
           |||||||||||||||||||||||
Sbjct: 487 tgtacagaatgagccatttgtct 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)