NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTTCAGAGACTAGTCAGCTCAGTGTTTTCCAGTATTGATT
CGGTTCATCTATACATTCTTTGTGAGCCTTCACAGGACCATCATCAGAAG
CCATGTCCCACAGTTATCTTCTGCCTACCCCCAAACTGCATCTAGTTGTT
GTGGATTCAGTGTAGACTCATAATCATCACTTTTTTTTTTACCATCATAC
AATACTATTGCACACTCTTGAGTCACATTTATTATTTATTTGTCTATGAC
TCATCTTCTCAAGAACTCCTTGACAAAGGAGCTCACATCACACTGTTTAC
TTCAGAGCTTCCCTGGGGGCCGGACTCCCAACTTTAACATAAGAGAAATG
TGATAAACTTTTATTGTCTCAGTGTTTGGCTTACAACATATCATATAACC
TGCTGCTCTGAATCCATGCAATCAAGGAAAGAAACACTAGGCAGACTGAG
AGAATAGTCTGTGTATACCCCAGGGCTGTACCCAGGCTGGGATAACCCTG
CAGACATTCTTTCTCTCCATCCCAGTTTATTGTCAGTGCTTCTTCTCAAG
GAAGAACACACAAAAAAACCGTGAAACTAAGAAAAGCNAATGGAAACTTC
AAATACAAAGACACTGGCTTTCCGAGGGGGGGAAATATACGGTTCAGCAC
GCTCAACCTCACTAATAAAAGACTCTATGGCTTTGAAAAGACTGTTGGCA

NTTTCATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAGAACGAGAGAAGAGAA
GGAAAGAAGGTAGGTAGGTAAGTAGAGTAGGGAGGAGAGATTGACTGATA
GTTTACTATTTTTGTTTTTTTTTCTTCTCCTTTTTTTTTTTTTCTTTTTT
TTTTTTTTCTTTTTCTTCTTCCTTTTTCTTCTTTTTTTCTTTTTCCCTTT
TTTTTTTTTTCCTTTTTCCTTTTTGTTCTTTTTTTTTTCTTTTTCCTTCT
TTCCTTCTGCCCCTCTTTTTTTTTTTTCCTCCTCACCCTCCTTCTTTTTT
CTCTCTTTTTTTTTTTTTCTCTCCTTTCTTTTTTCTTCTCTCCCCTCCCT
TCTTTTTCTTTTTTCCCTCTTTTTTTCTTTTCTTTTTTCTCTCCTTCTCC
TTTTCCTTTTCTTTTCCTTTTTTTCTTTCCTCTTTTCTTCTTTTTCCCTT
TTTTTTTTTTTCTTTCCTTTTCTTTTTCCTCTTTTCCTTCTTTTTTCTTT
TCTCCTTCCTTTTGCTTTTTTTTTTTTCTTTTTTTTTTTTCCCCTTTTTT
TTTTTTTTTCTTTTTTTTCTCCCTTTTTTTTTTCCCTTTTTTTTTCTCCC
TTTTTTTTTCCCCTTTTCTCTTTTTCTTTTTTTCCCTCTTTTTTTTTTCT
TTTTTTTTTTCCCTTTCTTTTTTTTTTTCTTCCTCCTTTTTCCCCCCCCT
TTTTTTTTTCCCCTTTTTTTTTCTTTTCCTTTTCTCTCCTTTTTCCTCTT
TCTCCCTTTTTTTTTCTTCTTTCTTTTTTCCCTTCTTTCTTTTTTTCN

Query= MSMg01no417_b09.b1 MSMg01no417_b09.b1 CHROMAT_FILE:
MSMg01no417_b09.b1 PHD_FILE: MSMg01no417_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:51 2005
         (528 letters)



>mm_chr1_187867121_187868046
          Length = 926

 Score =  957 bits (495), Expect = 0.0
 Identities = 517/525 (98%), Gaps = 2/525 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattttcagagactagtcagctcagtgttttccagtattgattcggttcatcta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattttcagagactagtcagctcagtgttttccagtattgattcggttcatcta 263

                                                                       
Query: 64  tacattctttgtgagccttcacaggaccatcatcagaagccatgtcccacagttatcttc 123
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 264 tacattctttgtgagccttcacaggaccagcatcagaagccatgtctcacagttatcttc 323

                                                                       
Query: 124 tgcctacccccaaactgcatctagttgttgtggattcagtgtagactcataatcatcact 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 tgcctacccccaaactgcatctagttgttgtggattcagtgtagattcataatcatcact 383

                                                                       
Query: 184 tttttttttaccatcatacaatactattgcacactcttgagtcacatttattatttattt 243
           |||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 ttttttt--accatcatacaatactattgcacactcttgagtcatatttattatttattt 441

                                                                       
Query: 244 gtctatgactcatcttctcaagaactccttgacaaaggagctcacatcacactgtttact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtctatgactcatcttctcaagaactccttgacaaaggagctcacatcacactgtttact 501

                                                                       
Query: 304 tcagagcttccctgggggccggactcccaactttaacataagagaaatgtgataaacttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcagagcttccctgggggccggactcccaactttaacataagagaaatgtgataaacttt 561

                                                                       
Query: 364 tattgtctcagtgtttggcttacaacatatcatataacctgctgctctgaatccatgcaa 423
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 tattgtctcagtgtttggcttacaacatatcatataacccgctgctctgaatccatgcaa 621

                                                                       
Query: 424 tcaaggaaagaaacactaggcagactgagagaatagtctgtgtataccccagggctgtac 483
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcaaggaaggaaacactaggcagactgagagaatagtctgtgtataccccagggctgtac 681

                                                        
Query: 484 ccaggctgggataaccctgcagacattctttctctccatcccagt 528
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccaggctgggataaccctgcagacattctttctctccatcccagt 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 926
Length adjustment: 10
Effective length of query: 518
Effective length of database: 916
Effective search space:   474488
Effective search space used:   474488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)