BAC Information

Click to search

BAC

Clone NameMSMg01-417F09
Chromosome1 (Build37)1 (Build37)
Map Location 63,694,186 - 63,694,65265,331,436 - 65,331,942
singlet/doubletsingletsinglet
Overlap geneGm215
Upstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23
Downstream geneMdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417F09.T7 (MSMg01no417_f09.b1)MSMg01-417F09.TJ (MSMg01no417_f09.g1)
ACCAG512941AG512942
length746753
length of high quality
(start - end)
595 (49 - 643)507 (75 - 581)
definitionCHROMAT_FILE: MSMg01no417_f09.b1 PHD_FILE: MSMg01no417_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:11 2005CHROMAT_FILE: MSMg01no417_f09.g1 PHD_FILE: MSMg01no417_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:11 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,694,186 - 63,694,652)(65,331,436 - 65,331,942)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGTCTCTGACCTGGACAAGATGACCTGGGAGTCATTATCA
TTGACTTACTTTGTATTTTTATATCTAGATTGGCATTGAGAAGGGAACAT
GAAATTTCCATTCATGTTTTCAGCTGTCTAATTCTACAAACTGGTCAGAC
TGTCTGGAAAAGAACACAGGGAGAAGTGGGAAATGGGACCACATTATTGC
TATTTGATGAGGAGGTACTGACCTTAACATCTGACTTCATTAACATTTTC
AATCAGAAAGGAGGTGGGGCAAGAGAGATAGCTTGGTAGTTAGGAGTGCT
TGTTGCTTCCAGAAGACCCAAGTTCAGTTCCCAGTACTCTCACTGGATGG
TTCACAAGTACCTGTAATTTGAGTCTCAGGGCATCTGACATCCTCTTCTG
GGCTCTTTGGTTACACAAAATGCCATACATGGACACACACACACACACAC
ACCTCTTTTAAAATTACATTTTCAGAAAAAAATTCTTGATATCATACTTA
ATCATTAAAAATTGCCCCACCATCTTATAAAAGTCTGCTCTCTAACAGGC
TTTGCCTTCAGTATAAATGTCCTAAAGCCCCAAGGTATGCAAGCTCAAGA
AGAGCAGTGGAAACAGCAGCCACCGGAGTCCTGTGTCAAAAGGCATCGCC
TGCTCTGCAGCAAATCACAGTCGGCATGGGCAGTTGAGTCCAATAA
NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTAACTCCTCTCCTCTGTGAAATG
TGGTTGGGACAGTTACAATTCTTATGCTTCCAGGTTCCCATCCTTTCCTG
GGTGATACCCATGATCACTCTGGTTCCTTACTCTGTTATGTCTTAGCCAG
ACACAAATGCCCATTTTGGAATGAGATTTTATAAAAGCTTATATTTAAAT
GTGCTGTTGAATATTTGATGTCTTCTCTGGTGAAGCAATAGTTCTTTATT
TGTGACTATTTTAAAGCCTAGCTTTAAAGAATCTAGTTTCTTCTAATTGA
AGTGCCATTTTCAGCAACAAATCAGAATCAACCATAACATAATTAGAGAA
AATGTACTATTGAACCTCCATTTCCAAGAATGTTCACACATAATCAGATG
GCCTTTAGCAAAGGTTGGTAGGTATATTTAGATGCTTTTTTCAATTAGAA
CTTGATCAGTTTCTCTGTTGTGAACATGCCACTTCATCTCAGAGAAACCA
CCTGGCAGTTCCAGCTCCCCAGAATCTGACAGTCGTCACCTTCCTCGGGA
ATATCATTTAGATGTGATGCATCTTGGGAAGCCTGGTCCATGACCCATAA
TTGCTACTTCTGCCACATCAGCCTGTTCTTCTTCAGCTTTTCTTATTACG
TGCCCTTATCTTATCCCCCCTTGAGAATTATCCTCTTCTGTTCTTCAAAA
ACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_f09.b1 MSMg01no417_f09.b1 CHROMAT_FILE:
MSMg01no417_f09.b1 PHD_FILE: MSMg01no417_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:11 2005
         (595 letters)



>mm_chr1_63694186_63695180
          Length = 995

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagtctctgacctggacaagatgacctgggagtcattatcattgacttacttt 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattcctggtctctgacctggacaagatgacctgggagtcattatcattgacttacttt 408

                                                                       
Query: 65  gtatttttatatctagattggcattgagaagggaacatgaaatttccattcatgttttca 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtatttttatatctaaattggcattgagaagggaacatgaaatttccattcatgttttca 348

                                                                       
Query: 125 gctgtctaattctacaaactggtcagactgtctggaaaagaacacagggagaagtgggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gctgtctaattctacaaactggtcagactgtctggaaaagaacacagggagaagtgggaa 288

                                                                       
Query: 185 atgggaccacattattgctatttgatgaggaggtactgaccttaacatctgacttcatta 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 287 atgggaccacattattgctatttcatgaggaggtactgaccttaacatctgacttcatta 228

                                                                       
Query: 245 acattttcaatcagaaaggaggtggggcaagagagatagcttggtagttaggagtgcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acattttcaatcagaaaggaggtggggcaagagagatagcttggtagttaggagtgcttg 168

                                                                       
Query: 305 ttgcttccagaagacccaagttcagttcccagtactctcactggatggttcacaagtacc 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 167 ttgcttccagaagacccaagttcagttcccagtactctcattggatggttcacaagtacc 108

                                                                       
Query: 365 tgtaatttgagtctcagggcatctgacatcctcttctgggctctttggttacacaaaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgtaatttgagtctcagggcatctgacatcctcttctgggctctttggttacacaaaatg 48

                                                          
Query: 425 ccatacatggacacacacacacacacacacctcttttaaaattacat 471
           ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 47  ccatacatggacacacacacacacacatacctcttttaaaattacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no417_f09.g1 MSMg01no417_f09.g1 CHROMAT_FILE:
MSMg01no417_f09.g1 PHD_FILE: MSMg01no417_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:11 2005
         (507 letters)



>mm_chr1_65331236_65332142
          Length = 907

 Score =  949 bits (491), Expect = 0.0
 Identities = 503/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaactcctctcctctgtgaaatgtggttgggacagttacaattcttatgcttccagg 60
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctctaattcctctcctctgtgaaatgtggttgggacagttacacttcttatgcttccagg 260

                                                                       
Query: 61  ttcccatcctttcctgggtgatacccatgatcactctggttccttactctgttatgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccatcctttcctgggtgatacccatgatcactctggttccttactctgttatgtctt 320

                                                                       
Query: 121 agccagacacaaatgcccattttggaatgagattttataaaagcttatatttaaatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccagacacaaatgcccattttggaatgagattttataaaagcttatatttaaatgtgc 380

                                                                       
Query: 181 tgttgaatatttgatgtcttctctggtgaagcaatagttctttatttgtgactattttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgaatatttgatgtcttctctggtgaagcaatagttctttatttgtgactattttaa 440

                                                                       
Query: 241 agcctagctttaaagaatctagtttcttctaattgaagtgccattttcagcaacaaatca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaagctttaaagaatctagtttcttctaattgaagtgccattttcagcaacaaatca 500

                                                                       
Query: 301 gaatcaaccataacataattagagaaaatgtactattgaacctccatttccaagaatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatcaaccataacataattagagaaaatgtactattgaacctccatttccaagaatgtt 560

                                                                       
Query: 361 cacacataatcagatggcctttagcaaaggttggtaggtatatttagatgcttttttcaa 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacataatcagattgcctttagcaaaggttggtaggtatatttagatgcttttttcaa 620

                                                                       
Query: 421 ttagaacttgatcagtttctctgttgtgaacatgccacttcatctcagagaaaccacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagaacttgatcagtttctctgttgtgaacatgccacttcatctcagagaaaccacctg 680

                                      
Query: 481 gcagttccagctccccagaatctgaca 507
           |||||||||||||||||||||||||||
Sbjct: 681 gcagttccagctccccagaatctgaca 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)