Query= MSMg01no417_j15.b1 MSMg01no417_j15.b1 CHROMAT_FILE:
MSMg01no417_j15.b1 PHD_FILE: MSMg01no417_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:32 2005
(583 letters)
>mm_chr1_123276213_123277195
Length = 983
Score = 1069 bits (553), Expect = 0.0
Identities = 574/581 (98%), Gaps = 2/581 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtgctc-gctgcaccttcttagttactgttataacttatgtagcaggacagg 62
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgc-cagctgcaccttcttagttactgttataacttatgtagcaggacagg 262
Query: 63 catatagagaggaagctgagatggattgcctttcagatgatcattactagagggacagcc 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 catatagagaggaagctgagatggattgcctttcagaagatcattactagagggacagcc 322
Query: 123 atgcagaactgtaagggccactgcagtggaatcacactacgggtgatagctgccttgaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgcagaactgtaagggccactgcagtggaatcacactacgggtgatagctgccttgaga 382
Query: 183 gcatgaaaggactctgcaggagagagcctcaggtcccagaatagaaagagtcagtcatag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcatgaaaggactctgcaggagagagcctcaggtcccagaatagaaagagtcagtcatag 442
Query: 243 taccatatgatggacaacctgacatgatcctaaaagggaaaaaccagactctacagtccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taccatatgatggacaacctgacatgatcctaaaagggaaaaaccagactctacagtccc 502
Query: 303 agagaacaaaaggaatttctgactctcacgggctttcaggggtatgatgcacaccatgtg 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agggaacaaaaggaatttctgactctcacgggctttcaggggtatgatgcacaccatgtg 562
Query: 363 acacagcctctgtgctaggagtcacaagacgttacattctgttgaatattgtcataggtc 422
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct: 563 acacagcctctgtgctaggagtcacaagacattacatactgttgaatgttgtcataggtc 622
Query: 423 tgagcatcaggcggagctggacttggttacagctacaaaagggcgggagactactcaact 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgagcatcaggcggagctggacttggttacagctacaaaagggcgggagactactcaact 682
Query: 483 ctgagagttgtgaggtcacacagcagctctctttggagttggccttgagagacagactgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgagagttgtgaggtcacacagcagctctctttggagttggccttgagagacagactgt 742
Query: 543 aggggggtgtgacctaatttgggggatagaaagcagaagct 583
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggggggtgtgacctaatttgggggatagaaagcagaagct 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_j15.g1 MSMg01no417_j15.g1 CHROMAT_FILE:
MSMg01no417_j15.g1 PHD_FILE: MSMg01no417_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:32 2005
(301 letters)
>mm_chr1_123425365_123426064
Length = 700
Score = 505 bits (261), Expect = e-147
Identities = 294/311 (94%), Gaps = 11/311 (3%)
Strand = Plus / Minus
Query: 1 cctagctctgagttccatccctggaatccacacggtggacaggaacaactgacttccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cctagctctgagttccatccctggaatccacacggtggacaggaacaactgacttccttt 607
Query: 61 agtttttctctgacctcctcatga----------tctctctctctctctctctctcacac 110
|||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 606 agtttttctctgacctcctcatgatctctctctctctctctctctctctctctctctcac 547
Query: 111 acacacacacacacacgcacacgcacacgcacactcacacacacacgtaaaagtaattta 170
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 546 acacacacacacacacgcacacgcacacgcacacgcacacacacacgtaaaagtaattta 487
Query: 171 aagaatgagattgaaaatggaaaggggatgttggaggagggtgaagagaatttcacgtaa 230
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 486 aagaatgagattgaaaatggaatggggatgttggaggagggtgaagagaatttcacgtaa 427
Query: 231 gtgcctttttctctttatccaagtgtaaatgagagtagctgcggggtggggtgcctgcct 290
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtgccgttttc-ctttacccaagggtaaatgagagtagctgcggggtggggtgcctgcct 368
Query: 291 atcctggacaa 301
|||||||||||
Sbjct: 367 atcctggacaa 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 700
Length adjustment: 9
Effective length of query: 292
Effective length of database: 691
Effective search space: 201772
Effective search space used: 201772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
