BAC Information

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BAC

Clone NameMSMg01-417L17
Chromosome1 (Build37)
Map Location 62,553,947 - 62,707,153
singlet/doubletdoublet
Overlap genePard3b, LOC667592
Upstream genenone
Downstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L17.T7 (MSMg01no417_l17.b1)MSMg01-417L17.TJ (MSMg01no417_l17.g1)
ACCAG513243AG513244
length763773
length of high quality
(start - end)		575 (43 - 617)511 (74 - 584)
definitionCHROMAT_FILE: MSMg01no417_l17.b1 PHD_FILE: MSMg01no417_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:42 2005CHROMAT_FILE: MSMg01no417_l17.g1 PHD_FILE: MSMg01no417_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,553,947 - 62,554,517)(62,706,643 - 62,707,153)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTCTTACGGTTGAGTTTATTTTTCCATATTATTACTGTTGTTTTA
TGTAGGAAGCATCACCATATGAAACACCAGGGAGGCAAGGTGGACTTGAG
ATTCCTGTCTCCCTATCTGCTTATAAGGACCAGGGTTGAAAGTAGTTAAT
GCTCTCTGTGTGTGCATTCCAGAGAGCATGAGTTAGCTCTCGCTCTTGGG
TCTAATGTTCTCCTGAAGGCTTTTCTGGTCCACTGTGCTTTCCCTTGGCC
AGGCTGAATGAATCTGGGCTGGGTTCCTTCCATTTGATCACTACAATGAT
TGCAGTAGGAAATACAACCCATTTCCTGCATGAAATTCTTCGTTAAAATG
CTTCTCAAAGTATATTTCTCCTCATTCTTATGCTCAAACTCCTGCTAGTC
TCTCAATTTATTATGATGTCAACTTTTGCAGTACAACTCAAGACTGTTGC
CCTTATACATTCCACGGTGCCATGTTTTCCCTGTGTCTGTTCTCTGTGGG
TTGGGTCCTCATGTTACTCAGGGCCTGGTTCTGATGTGCTACCCATCTGG
GATGGTAATGGTGACTTCCACCCAATAAGGATCGTGATGAATAGAATCAA
CGGTTACTTGCCTCTGCTCAGATTTCCCCGTAAGCACTGCACCTTACTTC
TGGTCCTAGTACAATTCTTAATTTAAAATTCCATTACTCATATATTGGGT
GGAAAAAATATCC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATACTCAACATCCATGTGACATAGG
TGCTGTTATTGCCATTCCCCATATTAGAAAACCAAGTCCTACAGTGGATA
CATTTCCCAGGGTCACGTGGTCTGTGCCTGAAAGGCTGGGATCTGGGTTT
AAAATCTTTATTTCAAGTGCAATGATTTAAGTCACACTAAGACATTTTGA
AAGTTCCTGCTAGGTTTTCTTCAAGAGCAGTATCCAGCTTATCTGAATAG
GATCATTTGCTGTCAAACCCCTGCCTTATTGACTGTGAATTGCTGGAAGA
GGTCCAGGAACCATCATTTTAAAAGAGAGATTTATTCATTGTTACTTCAT
GTGAATGAGTATTTTTACCTGGATGTATGTGTGCCATGTATATGTCTGGT
GCTTATGGGGACCAGAAGAAGGTGTCAGTTCTCCTGGAACTGCAGTTACA
GACATTTTTGGGCTGCCATGAGTGTGCTAAGACCAGAACCTAGGTCCTGC
CCAAGAGTAGTATGGGCTTTTAACAGCTGAGCCCAGAACAGGAATTGTTA
CACGTTTCCTAGGTGATCTTTATAGCTTGGTGAATCTGAAGCAAGGAATG
AAAGAAAGTATTCCTAGTTGAAAGATGCACAATTCTTGCCGGGTTTTATT
TACTCTTGTTTCCTTAAACATTGGCCAATTTGTAAAACAATTTTTGGCGA
TCGCTGACCCCCATTTTTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l17.b1 MSMg01no417_l17.b1 CHROMAT_FILE:
MSMg01no417_l17.b1 PHD_FILE: MSMg01no417_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:42 2005
         (575 letters)



>mm_chr1_62553743_62554717
          Length = 975

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttcttacggttgagtttatttttccatattattactgttgttttatgtagg 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttcctagggttgagtttatttttccatattattactgttgttttatgtagg 264

                                                                       
Query: 65  aagcatcaccatatgaaacaccagggaggcaaggtggacttgagattcctgtctccctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcatcaccatatgaaacaccagggaggcaaggtggacttgagattcctgtctccctat 324

                                                                       
Query: 125 ctgcttataaggaccagggttgaaagtagttaatgctctctgtgtgtgcattccagagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcttataaggaccagggttgaaagtagttaatgctctctgtgtgtgcattccagagag 384

                                                                       
Query: 185 catgagttagctctcgctcttgggtctaatgttctcctgaaggcttttctggtccactgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgagttagctctcgctcttgggtctaatgttctcctgaaggcttttctggtccactgt 444

                                                                       
Query: 245 gctttcccttggccaggctgaatgaatctgggctgggttccttccatttgatcactacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctttcccttggccaggctgaatgaatctgggctgggttccttccatttgatcactacaa 504

                                                                       
Query: 305 tgattgcagtaggaaatacaacccatttcctgcatgaaattcttcgttaaaatgcttctc 364
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgattgcagtagggaatataacccatttcctgcatgaaattcttcgttaaaatgcttctc 564

                                                                       
Query: 365 aaagtatatttctcctcattcttatgctcaaactcctgctagtctctcaatttattatga 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagtatatttctcctcgttcttatgctcaaactcctgctagtctctcaatttattatga 624

                                                                       
Query: 425 tgtcaacttttgcagtacaactcaagactgttgcccttatacattccacggtgccatgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtcaacttttgcagtacaactcaagactgttgcccttatacattccacggtgccatgtt 684

                                                                       
Query: 485 ttccctgtgtctgttctctgtgggttgggtcctcatgttactcagggcctggttctgatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttccctgtgtctgttctctgtgggttgggtcctcatgttactcagggcctggttctgatg 744

                                          
Query: 545 tgctacccatctgggatggtaatggtgactt 575
           |||||||||||||||||||||||||||||||
Sbjct: 745 tgctacccatctgggatggtaatggtgactt 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_l17.g1 MSMg01no417_l17.g1 CHROMAT_FILE:
MSMg01no417_l17.g1 PHD_FILE: MSMg01no417_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:42 2005
         (511 letters)



>mm_chr1_62706521_62707431
          Length = 911

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatactcaacatccatgtgacataggtgctgttattgccattccccatattagaaaacc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 633 caatactcaacatccatgtgacataggtgctgttattgccattctccatattagaaaacc 574

                                                                       
Query: 61  aagtcctacagtggatacatttcccagggtcacgtggtctgtgcctgaaaggctgggatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aagtcctacagtggatacatttcccagggtcacgtggtctgtgcctgaaaggctgggatc 514

                                                                       
Query: 121 tgggtttaaaatctttatttcaagtgcaatgatttaagtcacactaagacattttgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgggtttaaaatctttatttcaagtgcaatgatttaagtcacactaagacattttgaaag 454

                                                                       
Query: 181 ttcctgctaggttttcttcaagagcagtatccagcttatctgaataggatcatttgctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttcctgctaggttttcttcaagagcagtatccagcttatctgaataggatcatttgctgt 394

                                                                       
Query: 241 caaacccctgccttattgactgtgaattgctggaagaggtccaggaaccatcattttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caaacccctgccttattgactgtgaattgctggaagaggtccaggaaccatcattttaaa 334

                                                                       
Query: 301 agagagatttattcattgttacttcatgtgaatgagtatttttacctggatgtatgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agagagatttattcattgttacttcatgtgaatgagtatttttacctggatgtatgtgtg 274

                                                                       
Query: 361 ccatgtatatgtctggtgcttatggggaccagaagaaggtgtcagttctcctggaactgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccatgtatatgtctggtgcttatggggaccagaagaaggtgtcagttctcctggaactgc 214

                                                                       
Query: 421 agttacagacatttttgggctgccatgagtgtgctaagaccagaacctaggtcctgccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agttacagacatttttgggctgccatgagtgtgctaagaccagaacctaggtcctgccca 154

                                          
Query: 481 agagtagtatgggcttttaacagctgagccc 511
           |||||||||||||||||||||||||||||||
Sbjct: 153 agagtagtatgggcttttaacagctgagccc 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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