BAC Information

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BAC

Clone NameMSMg01-417O09
Chromosome1 (Build37)
Map Location 51,911,211 - 51,911,372
singlet/doubletsinglet
Overlap geneMyo1b
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417O09.T7 (MSMg01no417_o09.b1)MSMg01-417O09.TJ (MSMg01no417_o09.g1)
ACCAG513368AG513369
length788741
length of high quality
(start - end)
164 (129 - 292)510 (75 - 584)
definitionCHROMAT_FILE: MSMg01no417_o09.b1 PHD_FILE: MSMg01no417_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:56 2005CHROMAT_FILE: MSMg01no417_o09.g1 PHD_FILE: MSMg01no417_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGNGATTTCATAATGACTTNTACCAGAGACCNNCTCAATATTGCACTTT
AAGTGTGACAAAGGAACAAGACAACCAACTCTGTATGTTGTTAACCAACC
ATCTTAGGTACAAAAGTAGGGGGAAGGGGGAGACAACCACCCTCTTGCTT
CCTCAACAGTGAATACTCAAGAGCCAACAGGTTCCAACTTATGACAACTG
AACATGAGTTTTTAAAAAAAAACAAAACAAAACAAAACAAAACCAAACAA
AAAAACTCCCTGGAGAACTGACTTACTATAGAGAGATTCAAATGCCACCT
AAAACCTCTCAAGAATATCTGCACCCCTGTAAACCCAGAGCGACTGATCG
TGAGTCACGGGGATCCAATCCTGGGAACGGAAGCTTCCATCTGTATGTGG
CATACGGCACTTACTATGCATCCAGATAACATGCTGAATGATGGAGCCAA
TGCTGCTCCCTATGGCTTGAGAATGCCTTGTTCCTGGTCTTTTGCATCTA
CCTGATTTAACGGGGACCCCTTGCTACTTCCCCTCACTCCTTCTCATCAA
ACCTACTGGGCCAATTCTGCAGTAACGTTAACACATGGCTCTATTATGCC
CTAACCCTATTTTTATTTGGGCCCTTCATACCTTAGTTCTTTTTTATTTC
CCTTTGGCCCCGATATTTCCTCCACACTCCCCGTAAATATATGGATTTTG
GATAATTACATCCTCTGTCTTACTCCCTCTTATATTCA
NTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGAAGGGAGGCAGAGAGACTGTA
GGAGCCAGACTACTAGGAAGGCTGCTGTGAAACATTCTTTCCTAGAAATT
GTTGTGTAACCATGGAAACAGATGCAGACCTACAGCCAAGCATTAGATGG
ATCTCAGGGAATCTCGTGGAAGAATTAGGGGAAGGATTGAAGGATCCAAG
GGGGATAGGAACTCCACAAGAGATCAACAGAGTTAACTAAGATGGACCCT
TGGGGCTTCCAAAGACTGTTTCACCAACCAAAGAGCAAGCATGGGCTGGA
TCTAGACCTCCACTCCACCCCTTACACATATGCAGCAAATTTGCAGTTTG
GTCTTCATGAGGGTCCCCCAGCAACTGAAGTGGGGGGCTGTCTCTGACTC
TGTTGCCTGCCTGTGGATCTGGTCCCCCTAACTGGGCTGCCTTTTCTGGC
CTCAGTGGGAGAGGATGTACCTAGACCTGCAATTACTTGACGTGTCAGGA
TGGGGTGATACCCAGGGCGCTTCCCCCTTTCTCAGAGGAGAAGAGAGGGG
AATTGTCGGAGTGATTTATGAGGGGAGACCATGAGGAGAGGATGTTTATG
ATCAGTATGCACAGCGCATAAACCTATATGCTTTTGGAGCAAAACAGATT
TGGCTGCCTTACTTCGATAACAATCTTGGCCTTACCTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_o09.b1 MSMg01no417_o09.b1 CHROMAT_FILE:
MSMg01no417_o09.b1 PHD_FILE: MSMg01no417_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:56 2005
         (164 letters)



>mm_chr1_51911011_51911573
          Length = 563

 Score =  271 bits (140), Expect = 2e-77
 Identities = 158/164 (96%), Gaps = 2/164 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgtatgttgttaaccaaccatcttaggtacaaaagtagggggaagggggagacaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctctgtatgttgttaaccaaccatcttaggtacaaaagtaggggg-agggggagacaacc 259

                                                                       
Query: 61  accctcttgcttcctcaacagtgaatactcaagagccaacaggttccaacttatgacaac 120
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 260 accctcttgcttcttcaacagtgaatactcaagagccgacaggttccaacttacgacaac 319

                                                       
Query: 121 tgaacatgagtttttaaaaaaaaacaaaacaaaacaaaacaaaa 164
           ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 320 tgaacatgagtttttaaaaaaaa-caaaacaaaaccaaacaaaa 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 563
Length adjustment: 8
Effective length of query: 156
Effective length of database: 555
Effective search space:    86580
Effective search space used:    86580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)