CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACAGTGATGACCAATTTTTAGTATGCAAGCAAATTCAATATGTAGT
TGATAGAGTTGGATGTATAGAGAGGAAGCAGACAGAACTTTGCATTTAGT
TAAAGTGGGCTATTGTGATTATTTTTTACTTTTCTCCTTTATCCATATCT
CTTGGTATAAATTTTAATTATAGATCTTCAAATAAAACACTAACAAGTCA
CAAAAATCTCCCAACCACAATCCAGGATTTTTGTCTAAATAATGAGCTTC
ACACAACGTCCCTACTTACACAGAAAGGCTCTTCAGAAATAGTGCCCGAT
GTCTGAAGAGGCACCCCTATGCTTTAATTTTAGTGTTGGGTGTGAGCCAG
AGCAAGAAAGTGTATGAATTAAAGATCACTTGAAGGATGAGGACCTCTTT
TCCCTATGCATTTGTCATAATGAGAGAGTTTATCTTCACCCTAGTATCTT
TTATTAAAAGTATTTTATTTTAAGTTCTATATATTTGTGTGTCTGTGTTT
GTCTCTGTGTANGTTTGTTAATGTGAATGCANGTGCCCGGAGTGACCAAA
AACAACAGCAGCCCCGAAGCTGGAAGTTACCGACAGTTTGAGCCATCCCA
ATATAAATTCTGGGAGGGAAACTTTGATTTCCCTGCTGAGAAGAAATAAA
TTTTTAAACCCGGGCCCCCCAAAGGGCCCCGGGGAAAATAATTCCTAATT
TTCTTAATGGAAAAAGGGTTCCCCCCCCTTTTCCTCTTCCCTTTTGGCAA
CCGGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTAAAGATAGGAGAAAATTCAAG
AAGCTAAGAACGTTTGCTTTCAAAATCCTTATAAGTCTTCTTGTGAGTGG
TGGTTAATCTTAACTTCCAATTTTATTAGCCTAATATTAACCAAAAGACA
TTCTTCCGAATCTCTGAGGGCATTTTTGGAAATATTAACTGAAATGGGAG
AGACCTTGTCCCATAGTAGATGAAACCTTTGATTGGCACCCTGGCTAAGA
AGAGGCCCAAGAGGAAGGTAAAGCTCTCTGCTCACCTGCCTTTGCTTCTT
GCTGGCCTGCATCTATCCTATTGCTTTGGCTTTTACTGCTGCCTTCCATC
CCTGCCATCAGAATCCAGCATCTTCAGTCCTCCTGTAGACCATTGGGTCT
CCAGGAATCCACCAGATTTTCATCAGCAGATCATTATGCTGAAGCATCTA
CTCTTGTGAGCTGAAAAGACTCAGATTTCTAACCTCTCTGTTATTAGAAA
ATGATGGGCAGTTTAGACAGACCATATCATGGAAGCCAACCCTAAATCCC
CCTTGTAAGAAATAACAAATCCTTCAGTCCCCTCCCCCGGAAAAATAAAC
CCAGGGCCAAATTCTGGGAAGGGGACAGAAAGCCCCTCTGGCCCCTTTGG
TTTCTCTCCCAAAAAAATTATTCCTTTCTCCAAAGGTGGGGTTTCTGGTC
CCCCCCCCCCCCCCCCCTTTGTGAACTCGGGCGAATTTCACCCTTTATGC
CCG

Query= MSMg01no417_o22.b1 MSMg01no417_o22.b1 CHROMAT_FILE:
MSMg01no417_o22.b1 PHD_FILE: MSMg01no417_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:58 2005
         (493 letters)



>mm_chr1_130917257_130918149
          Length = 893

 Score =  872 bits (451), Expect = 0.0
 Identities = 475/489 (97%), Gaps = 10/489 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacagtgatgaccaatttttagtatgcaagcaaattcaatatgtagttgataga 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacagtgatgaaaaatttttagtatgcaagcaaattcaatatgtagttgataga 264

                                                                       
Query: 65  gttggatgtatagagaggaagcagacagaactttgcatttagttaaagtgggctattgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggatgtatagagaggaagcagacagaactttgcatttagttaaagtgggctattgtg 324

                                                                       
Query: 125 attattttttacttttctcctttatccatatctcttggtataaattttaattatagatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attattttttacttttctcctttatccatatctcttggtataaattttaattatagatct 384

                                                                       
Query: 185 tcaaataaaacactaacaagtcacaaaaatctcccaaccacaatccaggatttttgtcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaataaaacactaacaagtcacaaaaatctcccaaccacaatccaggatttttgtcta 444

                                                                       
Query: 245 aataatgagcttcacacaacgtccctacttacacagaaaggctcttcagaaatagtgccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataatgagcttcacacaacgtccctacttacacagaaaggctcttcagaaatagtgccc 504

                                                                       
Query: 305 gatgtctgaagaggcacccctatgctttaattttagtgttgggtgtgagccagagcaaga 364
           |||||||||||||||          |||||||||| ||||||||||||||||||||||||
Sbjct: 505 gatgtctgaagaggc----------tttaattttaatgttgggtgtgagccagagcaaga 554

                                                                       
Query: 365 aagtgtatgaattaaagatcacttgaaggatgaggacctcttttccctatgcatttgtca 424
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 aagtgtatgaattaaagatcacttgaaggatgaggacctcttttccccatgcatttgtca 614

                                                                       
Query: 425 taatgagagagtttatcttcaccctagtatcttttattaaaagtattttattttaagttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 taatgagagagtttatcttcaccctagtatcttttattaaaagtattttattttaagttc 674

                    
Query: 485 tatatattt 493
           |||||||||
Sbjct: 675 tatatattt 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)