Query= MSMg01no418_e16.b1 MSMg01no418_e16.b1 CHROMAT_FILE:
MSMg01no418_e16.b1 PHD_FILE: MSMg01no418_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:27 2005
(546 letters)
>mm_chr1_64180065_64181010
Length = 946
Score = 959 bits (496), Expect = 0.0
Identities = 534/554 (96%), Gaps = 13/554 (2%)
Strand = Plus / Plus
Query: 5 gaattctggtcatattccacgtggcatttacaatgagtgtcctagaacttggagttccca 64
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaatgctggtcagattccacgtggcatttacaatgagtgtcctagaacttggagttccca 253
Query: 65 gccttcgattttagatagtgtttccacacaacagtcaagccaccaggaaaggtagaccat 124
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 254 gccttcaattttagatagtgtttccacacaacagtca-gccaccaggaaaggtagaccat 312
Query: 125 atgactattacacagatgctcccactgaatataaatggaaaatttaggaggttatctagg 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atgactataacacagatgctcccactgaatataaatggaaaatttaggaggttatctagg 372
Query: 185 catcagaggggctggacttgcaggagactagagagaagcaaactcttccttagagttgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 catcagaggggctggacttgcaggagactagagagaagcaaactcttccttagagttgct 432
Query: 245 gtgtcactacagaagttggtagctggtcttaagggactgcttaagtgtgacatgcctttt 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgtcactacagaagttcgtagctggtcttaagggactgcttaagtgtgacatgcctttt 492
Query: 305 gggaggtgaagtaatcagaggctctaacactaccagtgaagtgatatttgccctaaccct 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 493 gggaggtgaagtaatcagaggctctaacactaccagtgaagtgatctttgccctaaccct 552
Query: 365 agccctaaccctaaccctaaccctaaccctaacc------------aaccctaaccctaa 412
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 553 agccctaaccctaaccctaaccctaaccctaaccctaaccctaaccaaccctaaccctaa 612
Query: 413 ccctgatcctttgtcttgacttttcttaatactttcctgagactcatgtagttcaggctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccctgatcctttgtcttgacttttcttaatactttcctgagactcatgtagttcaggctg 672
Query: 473 gcttcaagtttacagtggaggacagagtgatttcttcctattgtttccacttccttgagc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttcaagtttacagtggaggacagagtgatttcttcctattgtttccacttccttgagc 732
Query: 533 catgcgtgggatta 546
|||| |||||||||
Sbjct: 733 catgtgtgggatta 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_e16.g1 MSMg01no418_e16.g1 CHROMAT_FILE:
MSMg01no418_e16.g1 PHD_FILE: MSMg01no418_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:27 2005
(454 letters)
>mm_chr1_64369741_64370594
Length = 854
Score = 847 bits (438), Expect = 0.0
Identities = 450/454 (99%)
Strand = Plus / Minus
Query: 1 agtacttgagcccaaggcatcctttaaatataggcaatgtttgggcacctggagttctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtacttgagcccaaggcatcctttaaatataggcaatgtttgggcacctggagttctcc 595
Query: 61 agaactcctcattccaaggttactgttagtgttactctaagatgtccatcccaaacgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agaactcctcattccaaggttactgttagtgttactctaagatgtccatcccaaacgaaa 535
Query: 121 gggcatcatctattcttcagagaggacattaaatcctttatatagctgtcattaagcggc 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 534 gggcatcatctattcttcagagaggacattaaatccaggatatagctgtcattaagcggc 475
Query: 181 atgaagaggttaaacatttcttggaagagggtctttttacagtcatctctcaacaagcca 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 474 atgaagaggttaaacatttcttggaagagggtctttttacagtcatttctcaacaagcca 415
Query: 241 tcatatgcggcacagattgtctccatcattgctaacagatgcatccatggcaaaagacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcatatgcggcacagattgtctccatcattgctaacagatgcatccatggcaaaagacaa 355
Query: 301 ttttgcaagcccaggcagaaaaggacttgtgcttttctacaatctttcccctggctcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttttgcaagcccaggcagaaaaggacttgtgcttttctacaatctttcccctggctcaca 295
Query: 361 ttaaagctagccaggagaagaaacatagcaaagtttattagggacagctctctgggggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttaaagctagccaggagaagaaacatagcaaagtttattagggacagctctctgggggag 235
Query: 421 gaataatggggataaggagacagatatttctaag 454
||||||||||||||||||||||||||||||||||
Sbjct: 234 gaataatggggataaggagacagatatttctaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
