Query= MSMg01no418_f21.b1 MSMg01no418_f21.b1 CHROMAT_FILE:
MSMg01no418_f21.b1 PHD_FILE: MSMg01no418_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:32 2005
(534 letters)
>mm_chr1_52155965_52156900
Length = 936
Score = 955 bits (494), Expect = 0.0
Identities = 522/532 (98%), Gaps = 2/532 (0%)
Strand = Plus / Plus
Query: 5 gaattctttccattaggtgactgcataagaataagtgatccctaaataggtcaaccttca 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccattaggtgactgcataagaagaagtgatccctaaataggtcaaccttca 264
Query: 65 gtgcctttcccctttaatgcaatattccttaaaaggaaatcacacagacaatggcacagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 gtgcctttcccctttaatgcaatattccttaaaaggaaatcacacagacaaaggcacagc 324
Query: 125 cctgttcattcctatccccagatgtcctggcatcgaagacacatcaactgcaaccaggag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgttcattcctatccccagatgtcctggcatcgaagacacatcaactgcaaccaggag 384
Query: 185 ggctgcctagtcgtgacattcccctcatgctggagaatccactagataattcactttaag 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggctccctagtcgtgacattcccctcatgctggagaatccactagataattcactttaag 444
Query: 245 gccagaggtggttcctggcattaaatgccacttctctttaagagctacatgtctgtacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccagaggtggttcctggcattaaatgccacttctctttaagagctacatgtctgtacat 504
Query: 305 tcaactttagagtgtggcaggaaagacttagtagggtcttctgtcctagcacagcaccac 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaactttagagtgtggcgggaaagacttagtagggtcttctgtcctagcacagcaccac 564
Query: 365 actggtatctcttagcaacattcttctaggaacccgctaaggccaccacatgccaccatg 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actgttatctcttagcaacattcttctaggaacccgctaaggccaccacatgccaccatg 624
Query: 425 ctcaccctcccagagcaactgggtcccctcatgaagatctagagactggactcttagtct 484
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 625 ctcaccctcccagagcaactgggttccctcttgaagatctagagactggactcttagtct 684
Query: 485 ccttacaaaaccaagctaaatgagtaact--gacttattaactctaccttcc 534
|||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 685 ccttacaaaaccaagctaaacgagtaactttgacttattaactctaccttcc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 936
Length adjustment: 10
Effective length of query: 524
Effective length of database: 926
Effective search space: 485224
Effective search space used: 485224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_f21.g1 MSMg01no418_f21.g1 CHROMAT_FILE:
MSMg01no418_f21.g1 PHD_FILE: MSMg01no418_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:33 2005
(463 letters)
>mm_chr1_52322724_52323586
Length = 863
Score = 835 bits (432), Expect = 0.0
Identities = 456/464 (98%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 1 taaatgaaggatagttcttttactttgctgctttactgaaaataattctcttactgccaa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taaatgaagaatagttcttttactttgctgctttactgaaaataattctcttactgccaa 497
Query: 61 taaaacaacacagtgcagaagtctggaaatggctcagaggcaaacaggcctgaggtgatt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taaaacaacacggtgcagaagtctggaaatggctcagaggcaaacaggcctgaggtgatt 437
Query: 121 ggtcctcagctcctaatctcagggctaaggaattcagatgtacgtcaatgtgttcctcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 436 ggtcctcagctcctaatctcagggctaaggaattcagatgtacgtcaatgtgttcttcat 377
Query: 181 tttcatcttcaccatgaaagaattttggggcaagtagggcagttgctgaaatcctgtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttcatcttcaccatgaaagaattttggggcaagtagggcagttgctgaaatcctgtatt 317
Query: 241 tggcttcattaaggacatagactgaaatacactggacagaggattcccttcgcatgtgag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 tggcttcataaaggacatagactgaaatacactggacagaggattcccttctcatgtgag 257
Query: 301 ctcttctgccagtcggcaactgaataggcaaattaaacctcagatctggctttctgggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctcttctgccagtcggcaactgaataggcaaattaaacctcagatctggctttctgggga 197
Query: 361 gtagtgagattgctcagccagcaaaatgcttgccaagaaggcatgagaagcagagat-cc 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 196 gtagtgagattgctcagtcagcaaaatgcttgccaagaaggcatgagaagcagagattcc 137
Query: 420 ccagctcccatgtaaaaagccagatatgcaaggagctaaagaga 463
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 136 ccagctcccatgtaaaaagccagatatgcaagaagctaaagaga 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
