BAC Information

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BAC

Clone NameMSMg01-418O12
Chromosome1 (Build37)
Map Location 15,531,505 - 15,531,749
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418O12.T7 (MSMg01no418_o12.b1)MSMg01-418O12.TJ (MSMg01no418_o12.g1)
ACCAG514132AG514133
length758802
length of high quality
(start - end)
473 (48 - 520)245 (137 - 381)
definitionCHROMAT_FILE: MSMg01no418_o12.b1 PHD_FILE: MSMg01no418_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:14 2005CHROMAT_FILE: MSMg01no418_o12.g1 PHD_FILE: MSMg01no418_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTACTTACCCATCTGGTCCTGGAATTTTTTTGGCTAGGAGAC
TACTAATGACTGCTTCTATTTCTTTAGGGGTTATGGGACTGTTTAGATGG
TTTATCTGATCCTGTTTTAACTTTGGCACCAGGTATATGTCTAGAAAATT
GTCCATTTCATCCAGATTTTCCAATTTAGTTGAGTATAAACTTTTGTAGT
AGGATCTGATGAGTTTTTTGGTTTCCACGGTTTCCATTGTTATGTCTCCA
TTTTCATTTCTGATTTTGTTATTTATGATACTGTCTCTGTGAACTCTGGT
TAGTCTGGCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGGC
CAAGAAACAAGTTGGGAAGGAAAGGGTTTATTCAGCTTACACTTCCATAC
TGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACCCAAGCAGGTCAGGG
AGCAGGAGCTGATGCAGAGGCCATGGAGGGATGGTCTTTACTGGCTTGCT
TAGTCTGCTCTCCTATAGAACCCAAGACTGTGAGTCCAGAGATGGTCCCA
CCCACTAGTGTCCTTTCCCCCTTTCTCACTATTTTGACATAATGCCTTAC
CGTCGTCCTTTCTGGTCTTTTTCTCCTCAATCCGAACCCCCTTTCTCTTT
GAATATTCTCCCCCCGTTTTCCCTCTTTACCCCTATTGCCTTCCCTTTCC
CCTCGTTT
GATGGGCAGGCAGAGAGACNAGTAGTAGGCAGAGGGCGGAGGAGNNNGAG
GTGTGGCNNAGCGGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCGCGAGAATCATCCCACCTGGGA
CAGAAGCGCAATGTCTGTTTAAAGCCTCACTTGCTGTGGTTGCGTGATTT
CAGTAAACCACCACTGTAGGAGGAAGAAGGCATCAGGACGGAAGTGGAGA
ATGAAATTTAATTTCATATGGCTGTCTGTCAGTATTTATTGAGAACCCAT
GGGACAATCTTTTACACAGTTTTTCTCAGATTATATAGATTTTCAATACT
TAGGTTCTCACTGAGGTACTTTTCTGTCTTCTTTTTTAGTAAATATAGGA
GTTGGACTTTTTTCTTGTCAAGGTGAGTTTAATTTTTCCATATTTTATAA
TGCAATGTATTACTACTTTTTCCTTATTTTAAATTGCCAAAATGTCAGGT
TTTTTCCACTGATTTAGGAAGATATGTTGAAACTATACTGTAATATCAAA
AGTTAAAAAAAACCAATTAAATACTTTCAAAATGAGGAAATAAACAAGAA
GGAAATTGTTACAACTGTGCAAATAAAAGTAACACAATCCATGTGGCTGA
ATAGATTTTTATGGAAATTGCTAAGCTGATGTAACCTTCCTGAAGGCGTG
AAAAGGGCACAAGGGATTGTGTATTTATATATCACAAAGTCCTAGCCTGC
GCTTCCAAAACCTCGGGGAAAACTACATTAAGAAAATATTGCCCTAATTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_o12.g1 MSMg01no418_o12.g1 CHROMAT_FILE:
MSMg01no418_o12.g1 PHD_FILE: MSMg01no418_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:14 2005
         (245 letters)



>mm_chr1_15531305_15531949
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcccacctgggacagaagcgcaatgtctgtttaaagcctcacttgctgtggttgcgtg 60
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 catcccacatgggacagaagcgcaatgtctgtttaaagcctcacttgctgtggttgtgtg 386

                                                                       
Query: 61  atttcagtaaaccaccactgtaggaggaagaaggcatcaggacggaagtggagaatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttcagtaaaccaccactgtaggaggaagaaggcatcaggacggaagtggagaatgaaa 326

                                                                       
Query: 121 tttaatttcatatggctgtctgtcagtatttattgagaacccatgggacaatcttttaca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaatttcatatggcagtctgtcagtatttattgagaacccatgggacaatcttttaca 266

                                                                       
Query: 181 cagtttttctcagattatatagattttcaatacttaggttctcactgaggtacttttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtttttctcagattatatagattttcaatacttaggttctcactgaggtacttttctg 206

                
Query: 241 tcttc 245
           |||||
Sbjct: 205 tcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)