BAC Information

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BAC

Clone NameMSMg01-419C17
Chromosome1 (Build37)
Map Location 48,971,286 - 48,971,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419C17.T7 (MSMg01no419_c17.b1)MSMg01-419C17.TJ (MSMg01no419_c17.g1)
ACCAG514334AG514335
length710763
length of high quality
(start - end)
271 (363 - 633)505 (66 - 570)
definitionCHROMAT_FILE: MSMg01no419_c17.b1 PHD_FILE: MSMg01no419_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:35 2005CHROMAT_FILE: MSMg01no419_c17.g1 PHD_FILE: MSMg01no419_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTATCTTATTTGCGCCGCTGTAGACTCCTATATTTCGAGAGCCGCGG
GAATCTCTTCTTTCTCCCGTGTTCAGAGAGTTTTACACTTTGTGTCATCT
TATTTTTTTTCCTCTACACTTTTGTTGCTGTCGGCAGAAACTGCTGCGAT
GATAATGTAGAGAAGCGTCGGAGAAGAAGATCCTCCAGCGGTGCCACCAT
GATGTGATGCATTATTATGGAGAGCCCCCCACCTCTGACTCTTATTTGTG
TCTCTGTGGAGCACACACAAAAGGGACCCTATGTGTGATGTGCCACCCAA
AAAATCCAACAAGCCCTTGATATTTTCAAATTCATATATTTGCAAACAAC
CAATGGGCAATAAGTGATAAGCCCTGTGGTTGAATTAGGGGAAAACTGGA
AGATACTGAGTAGGAAAGCAACCCAGTGGTGGACCAGCATTCCCAATTAA
CCTGGGCCACGAGATCTCTCAAACACTAGGCCACCAACCAAGCAGCATAT
AGTAGGTGATATGAAGCCCCAACACATACATAGCAGAGGACTGCCACTCC
GGGTTCAGTCAGAGAAGATACCTAACCCTCAAGGGATTGGAGGCCCCGTG
GAGTTTATAGGTATGATGGGGAAAGGGCTGGGTAGTGGGGACATCCTCTT
GTTTACTANAGGGAAGGAAGGAGATGTAACATGTGGAACATTCTCAGGGT
GGACCAGGAG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACGACTGGTCATGAAAAACTCAATAATTTCTAT
ATTGTAAATACAGTGATATGTGCTGCTGTGTGTGACGATATGTGAGCATG
TGTGTGTGTGTATGAGGGCATGGGTGTGTTCATGAGTCTGTGCGTGTGTG
TGTTCATTTGTCTGTGTTTTGTGTCTTTTCTTTCCCAGATATAGGTAACA
TTTCATTTATTGTCACAACTGCTTCTGATAATATTTGTCTCCTGCTTGAT
GTCACAAAAACTCTTTTCTTTACTAGCCAGGTCAATGTCATATTTTTCTT
CTGTATGCTACAGCAATATTTACTGATATTCATTGTCAGTATATTTAATG
AAGAGACATTGTTATTTTATTCATCTATACATGTCAGTTTTAAAATTTAA
TGTTTATAATTTTAAGTTATTCTTAATTAATTAATTAATTAATTAATTAA
TTAATCCTGTGTTTTGTGAATCTATACAGTACATGACAAGACAAAATTTT
GAGGTCAGAGGATGCCTTGCAGTAGTTGATTTTTCCTACCAAAAGGATCT
AAGTTTATTACATATTTTACGAATATTTTCTACAACAGGCTTTTCATCTT
TCTTTCTGTTGTGGTTGTGAAAACTAATTTCCTATCTTTATCCACCATGG
GGATTTAAGGGCCTAAAGGAAGCAATGTCCCCCCCCCCCCCTTCTTTTTT
TATTTTCCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_c17.g1 MSMg01no419_c17.g1 CHROMAT_FILE:
MSMg01no419_c17.g1 PHD_FILE: MSMg01no419_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:35 2005
         (505 letters)



>mm_chr1_48971086_48971990
          Length = 905

 Score =  919 bits (475), Expect = 0.0
 Identities = 494/505 (97%), Gaps = 8/505 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacgactggtcatgaaaaactcaataatttctatattgtaaatacagtgatatgtgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacgactggtcatgaaaaactcaataatttctatattgtaaatacagtgatatgtgctg 260

                                                                       
Query: 61  ctgtgtgtgacgatatgtgagcatgtgtgtgtgtgtatgagggcatgggtgtgttcatga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtgtgatgatatgtgagcatgtgtgtgtgtgtatgagggcatgggtgtgttcatga 320

                                                                       
Query: 121 gtctgtgcgtgtgtgtgttcatttgtctgtgttttgtgtcttttctttcccagatatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgtgcgtgtgtgtgttcatttgtctgtgttttgtgtcttttctttcccagatatagg 380

                                                                       
Query: 181 taacatttcatttattgtcacaactgcttctgataatatttgtctcctgcttgatgtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacatttcatttattgtcacaactgcttctgataatatttgtctcctgcttgatgtcac 440

                                                                       
Query: 241 aaaaactcttttctttactagccaggtcaatgtcatatttttcttctgtatgctacagca 300
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aaaaactcttgtctttactagccaggtcaatatcatatttttcttctgtatgctacagca 500

                                                                       
Query: 301 atatttactgatattcattgtcagtatatttaatgaagagacattgttattttattcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatttactgatattcattgtcagtatatttaatgaagagacattgttattttattcatc 560

                                                                       
Query: 361 tatacatgtcagttttaaaatttaatgtttataattttaagttattcttaattaattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatacatgtcagttttaaaatttaatgtttataattttaagttattcttaattaattaat 620

                                                                       
Query: 421 taattaattaattaattaatcctgtgttttgtgaatctatacagtacatgacaagacaaa 480
           ||||||||||||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taattaattaat--------cctgtgttttgtgaatctatacagtacatgacaagacaaa 672

                                    
Query: 481 attttgaggtcagaggatgccttgc 505
           |||||||||||||||||||||||||
Sbjct: 673 attttgaggtcagaggatgccttgc 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)