BAC Information

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BAC

Clone NameMSMg01-419D01
Chromosome1 (Build37)
Map Location 121,769,607 - 121,769,848
singlet/doubletsinglet
Overlap genenone
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870
Downstream geneLOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419D01.T7 (MSMg01no419_d01.b1)MSMg01-419D01.TJ (MSMg01no419_d01.g1)
ACCAG514350AG514351
length747734
length of high quality
(start - end)
242 (78 - 319)560 (69 - 628)
definitionCHROMAT_FILE: MSMg01no419_d01.b1 PHD_FILE: MSMg01no419_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:37 2005CHROMAT_FILE: MSMg01no419_d01.g1 PHD_FILE: MSMg01no419_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTAGAGGA
CCGCGGAATTCTCACTATTCCCGGAGTACCACCATGCCTAGCCTTTTAGC
ACACTTTCTGGGTTTTGATCTCAAGTCCTAATGCCTGGGAGATGAGCACT
TTATCTATTAGGCTATCTCTTCAGCCTAATATATTCACATTCTGTTTCTT
CTATTCTTCTCTAGAGATTGATGTCTAATATAGAGTGCCATCATGAATCC
TGACCTGATAGATCTTCCTGGTGCTTAGCAACCTCAACTGGGACTGTCAA
AAAAGCAACTGCATAGTGTGTTGGTGGTTGTACCCTGTGGTGAGTAGTTC
ACCCCTCATTACCTTGGACCATGTTACATTGTTGGTTTAGTCATGTTGTT
ACTGTAGTGAAATGTCTGGATATTTTATAAAGAGATGAAGTTTTCCTGTC
TCAAGGCTCTGAAGATTCAAAGGCATCCTTCATTGACTTGACTTTGGAGG
TGACCTCCTGGTGGATGTCTCCCCAGTGGGAGGAAGGTTTTAAGAGAAGG
AAAGATTACTTGTTTGAGAAAGGAATTCTGAGACAAAACGGGATTCCCGC
TAGAACCTAAAATAATTTGGGGACGCTTATGCTCTCCAGGGGCCTTCCCC
CTAATGTTTTTTTTCTTTTATGAACAGGTTTTCTTGGTTTTATATACACC
TTGGTAAAAAATCCCTTCTAATTCATTCCCTCTTTTTCCACCTTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAATGCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGCTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCACTGCTGGTGGGCTTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCT
GGAGGTTCCTCAGAAAATTGGACATAGTACTACCAGAAGATCCCGCAATA
CCTCTCCTGGGCATATACCCAGAAGAAGTTCCAACTGGTAATAAGGACAC
ATGTTCACAGCAGCCATATTTATAATTATATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGCT
ACATTTACACAATGGAATACTGCTCAGCAATTAAAAACAATGGATTTATG
AAATTCTTGGACAAATGGATATACCTGGAGGATATCATCCTTAGTGAGGT
AACCCAATCTCACAGAAGGCATTATATGTGCACTCACTGATAAGTAGAAA
TTAGCTCAGAAATATAGAACACCCATGATACCATTTGCAAAACACAAGAA
AATCATGAGGATGTAAGACCAATGGGTGGATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_d01.b1 MSMg01no419_d01.b1 CHROMAT_FILE:
MSMg01no419_d01.b1 PHD_FILE: MSMg01no419_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:37 2005
         (242 letters)



>mm_chr1_121769307_121769948
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaccatgcctagccttttagcacactttctgggttttgatctcaagtcctaatgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 accaccatgcctagccttttagcacactttctgggttttgatctcaagtcctaatgcctg 483

                                                                       
Query: 61  ggagatgagcactttatctattaggctatctcttcagcctaatatattcacattctgttt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 482 ggagatgagcactttatctattaggctatctcttcagcccaatatattcacattctgttt 423

                                                                       
Query: 121 cttctattcttctctagagattgatgtctaatatagagtgccatcatgaatcctgacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttctattcttctctagagattgatgtctaatatagagtgccatcatgaatcctgacctg 363

                                                                       
Query: 181 atagatcttcctggtgcttagcaacctcaactgggactgtcaaaaaagcaactgcatagt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaagatcttcctggtgcttagcaacctcaactgggactgtcaaaaaagcaactgcatagt 303

             
Query: 241 gt 242
           ||
Sbjct: 302 gt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)