BAC Information

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BAC

Clone NameMSMg01-419F10
Chromosome1 (Build37)
Map Location 26,975,348 - 26,975,778
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419F10.T7 (MSMg01no419_f10.b1)MSMg01-419F10.TJ (MSMg01no419_f10.g1)
ACCAG514464AG514465
length1,123764
length of high quality
(start - end)		---431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no419_f10.b1 PHD_FILE: MSMg01no419_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:50 2005CHROMAT_FILE: MSMg01no419_f10.g1 PHD_FILE: MSMg01no419_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAAAGCATTAGTTCCATCCTTAACTGCGGCGCTGTGAGCCCATTCCCC
TAAAACAGTGCAACTTTTGCTAGCTGTTTCTTTATTTTTTATCGCCGTGC
CACAATCTCATTCCTTTATTAGGCCAAATCTGTTGTATTCCTCCATTTAT
TCCTTTCCCCTTACCATTTGCGGTGCAACTCGCCCACGCCCCCCATTTCT
TCCCCGATCCACCACACNCGCCTTATATCTTCCGCCCTTGGACAAAAATT
TCGAGGACTGTGAAGATAAACGCACACCAAACGTCTTTTCGCCACGCAAC
TCTATTCCCGTATAATTTTTATGGTCGGATAAAGAACGGCATATAGAAGG
GACGGACGCACGGCAAAAAAATACGCCCTCAAATGCGCTAACTTGTTTAT
CCACGCCCGCGATTAACGCGACCCGTATAATTAGCGCCGCAGCACAGAAC
TTTACGCTTTTGCCCCCCCTACTACATAATCCCCGCTATGCACGGCGTAT
CAAATCATCGTCTCACCGAAATCCGCGGGCCCCTTTTATCCGATCCTACG
CGGCCGGGCCGTGGGTGAGAAATAAAAGAATGAGTACCCACGTCCCAGAG
GCGGACGGGCCACAAAAATTCCGGTCCCCTGGTATTGCGCGTCCACCCCG
CCATATAACAGCGCGTCTAGTTCCCATTTCCCCGGTTTGTTCCAACCCCA
ACCCCTATTATATTTTGTTTCCTATTCGCGCCGCGCTCGTCCCCCCATTA
ACTTATATTGGCGCTCGTACACACCCTAATCGATAAAACGCTGCGCGCCA
TTTTATGCATACTCGCGCCGAGCGCCAAAATCATGAACCAACGAGAGTTA
GTTATTTAGCGCGGTTCCCCTCCGAAAGCATATTGCCGTGTTACGGGCGC
CGGAAGAATATAACACCCCCACCGATAGATACAAAAATATATTAAAATCC
GCACCCTTATTGTCTCTCTCCTCCACCCCGCATTACTCCTCCCCTTTATA
TTTCCGCGTACACAGAATCCCCGCACACCCAAAGAAGTGTTGTTTTTTTA
CAACCCCTGCCCCTTCCCCTTATAATTTCGCCCTGTTCCCGCAAAAAGCG
CAACACCTATATTACCCACCCTA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCTTAAGGTGGAGGAAGGAGAGCTGGCT
TATAAGACTAGTTCCCCGACATCTGCCTTCTGACCTTTGACCTCTGATCT
CTGAGCTCTAACCACATTCCTTGGTATTTACATGTCATTATTTCAGACAC
ACACTTCTTACACATGTATGTTGCTGATGCTGATAATGATGATAAACCTC
CAATTCTAGTAATCTTCTCCAAATAAATGCAAACTGAAGACATCAAGCAC
ACAAGAACATATTCAATTAATAGCAAGAACAAACTTTTATGTTTATCAAT
GACAGAAATATATATAACATTGGATACATTTGCATAATAGCATATCAAAC
ATTCATGAGAATACAATAATGTTAATAAAAGGTATGTATGAATTATTACA
GATATTAAATAAAATGAGCCAAGTGTAAAAATTATATATGTGACACAGCA
ATTCAAAGAAGTTATACTTAATTTATAGCAAGATAAATCAGACCAGTGAA
CCTTCCTAAGGGAAGAATCATGTCTTTTTGAAAACTTGAAAATAAGGGTT
ATTTTTCCTTCCGGGGGCTTTACATAAAAAAAATTATTTTTGTAAAGATT
GAGTTTCCCCAATAATTTTATTATCCCCCACCCTTTTAATTTTGGAAAGT
TTTTTTTATAAGCCAACCCCCTTTTTCCTCTTTTCCTCCCCACTGCTACC
TTTTTTTCCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_f10.g1 MSMg01no419_f10.g1 CHROMAT_FILE:
MSMg01no419_f10.g1 PHD_FILE: MSMg01no419_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:50 2005
         (431 letters)



>mm_chr1_26975148_26975978
          Length = 831

 Score =  795 bits (411), Expect = 0.0
 Identities = 426/431 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccttaaggtggaggaaggagagctggcttataagactagttccccgacatctgccttc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaccttaaggtggagggaggagagctggcttataagactagttccccgacatctgccttc 572

                                                                       
Query: 61  tgacctttgacctctgatctctgagctctaaccacattccttggtatttacatgtcatta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 571 tgacctttgacctctgatctctgagctctaagcacattccttggtatttacatgtcatta 512

                                                                       
Query: 121 tttcagacacacacttcttacacatgtatgttgctgatgctgataatgatgataaacctc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 511 tttcagacacatacttcttacacatgtatgttgctgatgctgataatgatgataagcctc 452

                                                                       
Query: 181 caattctagtaatcttctccaaataaatgcaaactgaagacatcaagcacacaagaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caattctagtaatcttctccaaataaatgcaaactgaagacatcaagcacacaagaacat 392

                                                                       
Query: 241 attcaattaatagcaagaacaaacttttatgtttatcaatgacagaaatatatataacat 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attcaattaaaagcaagaacaaacttttatgtttatcaatgacagaaatatatataacat 332

                                                                       
Query: 301 tggatacatttgcataatagcatatcaaacattcatgagaatacaataatgttaataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tggatacatttgcataatagcatatcaaacattcatgagaatacaataatgttaataaaa 272

                                                                       
Query: 361 ggtatgtatgaattattacagatattaaataaaatgagccaagtgtaaaaattatatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggtatgtatgaattattacagatattaaataaaatgagccaagtgtaaaaattatatatg 212

                      
Query: 421 tgacacagcaa 431
           |||||||||||
Sbjct: 211 tgacacagcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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