BAC Information

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BAC

Clone NameMSMg01-419F23
Chromosome1 (Build37)
Map Location 27,892,295 - 27,892,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419F23.T7 (MSMg01no419_f23.b1)MSMg01-419F23.TJ (MSMg01no419_f23.g1)
ACCAG514489AG514490
length762770
length of high quality
(start - end)		51 (116 - 166)409 (66 - 474)
definitionCHROMAT_FILE: MSMg01no419_f23.b1 PHD_FILE: MSMg01no419_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:53 2005CHROMAT_FILE: MSMg01no419_f23.g1 PHD_FILE: MSMg01no419_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAGTNGTACTACATAAATCAAGTACTTGCTATGGCTAGC
TGCACTGCCCCTTTCTTATCTTTAATATTTTGGAAAATTTTTTAATAATT
ACTTTGAATAAATGATAGTTATGTAAAAGTGAACACTGACTGAAAAAGAA
CAGGGTTGGTTTTTGGTTGGTTGGTTGGTTGGTTTGTTGGTTTGNTTTGC
NCNGNNNCNCCNNNNCNCCNCAANNACCACNACCACCTCCCTAACCCNCC
CCCCCTACCCCCCAACCTTCTTTTTTTTCAAANANNNCCNCAACACACCC
AACCTTCCTCTCCTCTTTCTCTTACCACTACAATTATANNTATCCNTNCT
CCTTTATTTCACCCCCACCAATTCCACTCATCCCCAATTTACCANACTTA
TTTCTACTCTTTCCACCTTCCCCTCTTTTTACCACTTTTATCACCTTACT
TTCACCTTCTACTTTTCTTTTCCCTTTTTCTTTTTTCCACTCCCCCCCCC
CCCATTTTATTCCCCCCCTCCCTCCTCATCCCACCATATTTCTTTCTTTT
TTCCTTCTTTTCTCCCCTTCCCTTTTTCTATTTCCCATTTTCCCCCTCTC
CCTCTCCCTTCTTTTCCTCCCCCCTTTTTTTCTTCCCCCCTCCCCTCTCC
TTATTTTTTTTTTTTTTTCCCCTCTCCTCTCTTCCTTCTTTTTTCTCCTC
TTTCCCCTTTCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGGAGCTCATGTCATAAAACAACAACAAATACCAT
AAACATACAAAAATATGACAGTGTTTATTGGACATATTGAGAATAAATAT
AATTTTTGAAAACAAAGAAATATATATATAACTTCTATCTATAAAGATTA
TGCTAATGCTTATATTTTCTAAACTATATCAATTTAAAAATGATGGAAAG
GCTGATTTAGTTTATGTATAGTTTTGCTTGTTGATTATGTGCAATAATTT
AAAACACACAAACTTATAATTATCATTCACATGGAATGGTTGAAAGTGTT
TGACAATTTTGTCAGGCAATTTAAGACGTTGGATTGAATATGTACTTAAA
ATTTATGAAGTGGTTTCTCACTTGTCAAAGAAAACTTACATTGCTTTGTG
GAAATGAATATATTAGATCTACAAAATTCACGATTATACAAGGCAACTTA
GAATAACTTTATGATGACAAAAATCTGCTGTTTTCCTTTGTGGAAATGTT
TTAATTTCTTTTTTTTGAACAAAGTTTTGCTGGGGAAGCATAATTGGCCG
GGAATAAAAAAAAAGAACAAACTGGATTGAAACCCTTCCTTCTTCTTGCC
CTTGGAAAAATGGGATTCATGGGGGGGACAAAATGAAGAAAGGGGGGTTT
TTCTCGTATTTTTCACAAACATGGGGAAAAGGGGGGGGGGGCCCATTTTT
TTTTTTTCTTTTTTTGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_f23.g1 MSMg01no419_f23.g1 CHROMAT_FILE:
MSMg01no419_f23.g1 PHD_FILE: MSMg01no419_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:53 2005
         (409 letters)



>mm_chr1_27892095_27892903
          Length = 809

 Score =  737 bits (381), Expect = 0.0
 Identities = 402/409 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagctcatgtcataaaacaacaacaaataccataaacatacaaaaatatgacagtgtt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 609 tggagcttatgtcataaaacaacaacaaataccataaacatacaaaaatctgacggtgtt 550

                                                                       
Query: 61  tattggacatattgagaataaatataatttttgaaaacaaagaaatatatatataacttc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 549 tattggacatattgagaataaatataattattgaaaacaaagaaatatatatataacttc 490

                                                                       
Query: 121 tatctataaagattatgctaatgcttatattttctaaactatatcaatttaaaaatgatg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 489 tatctataaagattatgctaacgcttatattttctaaactatatcaatttaaaaatgata 430

                                                                       
Query: 181 gaaaggctgatttagtttatgtatagttttgcttgttgattatgtgcaataatttaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaaggctgatttagtttatgtatagttttgcttgttgattatgtgcaataatttaaaac 370

                                                                       
Query: 241 acacaaacttataattatcattcacatggaatggttgaaagtgtttgacaattttgtcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acacaaacttataattatcattcacatggaatggttgaaagtgtttgacaattttgtcag 310

                                                                       
Query: 301 gcaatttaagacgttggattgaatatgtacttaaaatttatgaagtggtttctcacttgt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatttaagatgttggattgaatatgtacttaaaatttatgaagtggtttctcacttgt 250

                                                            
Query: 361 caaagaaaacttacattgctttgtggaaatgaatatattagatctacaa 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caaagaaaacttacattgctttgtggaaatgaatatattagatctacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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