BAC Information

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BAC

Clone NameMSMg01-419J13
Chromosome1 (Build37)
Map Location 121,393,536 - 121,393,730
singlet/doubletsinglet
Overlap geneRalb
Upstream geneClasp1, Tcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb
Downstream geneTmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419J13.T7 (MSMg01no419_j13.b1)MSMg01-419J13.TJ (MSMg01no419_j13.g1)
ACCAG514661AG514662
length681768
length of high quality
(start - end)
195 (136 - 330)289 (320 - 608)
definitionCHROMAT_FILE: MSMg01no419_j13.b1 PHD_FILE: MSMg01no419_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:11 2005CHROMAT_FILE: MSMg01no419_j13.g1 PHD_FILE: MSMg01no419_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTTTTNNTTTTTAAATTGGGGGCGGTTATANGAGCCCTANATTCT
CCCAGAACCGGGGAAATCCGAAATTCCCCATCCATAACCCGTCTCATGGG
GGATTTTAGAACCCCAAACCAGGATCATCGATTGCTCCCCTCCGAGGCTC
CGCTGCCCTGCTGCTCCCACTTGGCAATGCCCATCCTTCTAGACTGCAGA
GCTCATGTTCCCCAGGGCCTATCTCTTCCCTAAGGTTTTCTCCTGGCTGA
GGCTCAGGCTGCCACGTTTCTCACTCCTCCACGGTCTCCCTGGACTGAGC
ACATCTATCCAAGTGGCTTCCTGTGTCTCCTCTTACTGGAGGACAGAGCC
CAGGCCCCTCTGCCTTCCTCACCCCACTGGCTGTCTTGCAGGAATTTCAA
TTCAACAGTCCCAAATAGATCTCTCCACTCTTCGTCCCTCTACCCTTAAA
GTCTGATCCTCAGGCTAGAAAGAAGTCCTTGGAGGAAAAATCCCTTGGTT
GCAACCCCGAATTCCTCGGGAAACCATGTGAGAAAGAACACCCCCCCACT
TCTTTAAAACTTGCCCGGGGGAAGGGGCCACGTGTGTTTTCCCACACCCA
CCCCCCATGTTTATACCAAAAAAAAAAAATTCTCTAAGCGGGGCTCCCCC
TTCCTGCTTTTTTCCCCCCCCCCCTTTTTTC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGAGCGTGTAAAAGCTCTAGAAGTAATGTCAAG
TAATGACAAATGGAATTGGATCACATTTTAAAGCTTCTGTTCAATGAAAG
AAATTATCAGTGGAGTGAAGAGATGCTGTTTGCCAATGGGAAATCTGACC
CGATTAATATCTAGATGGGACAAAACAAAATATCCACTTAGTAAATAAGC
AAATAAGTTGAACTAACAGTTCTCAAAAGAAGAAATACAAATAGCCAATG
GATATATGAAATTTTTTCTACATCCTTTAGTTATTAGGGAAATGAAAAGT
AAAACTTGTTTGTCATTTTATCTCATTCTGCTCAGAATGGCCATCCTCAA
GAAACTAGATAAGAAATGATGGTGAGGATATGGGAAAAGTGGAGCCTTTA
TTCACATCTTCTGAGAATATGAATCGTTACAGTCTCTGTGAAAATCAGTA
TGTGGGTTCCTTGAATATTAAACTACCACATGACCCAGCTATTCCACAGA
TTAATATATACTTTAACCACTTGATGCCAGTTCAATATATCACAGATATG
CTTTCATTTTATTGGTATTTTGTAAAATATTATTAATAAATGGACATTAT
TATATTTATTATTGCCATACTGTTTACCAAAAGCCCACATAGGAAGCCCG
CCTAAATGCCCTCCACCGAAGGTTGATAGATAGATGGTTTGTAGAATGCT
TGTTTGATACGTTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_j13.b1 MSMg01no419_j13.b1 CHROMAT_FILE:
MSMg01no419_j13.b1 PHD_FILE: MSMg01no419_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:11 2005
         (195 letters)



>mm_chr1_121393336_121393930
          Length = 595

 Score =  331 bits (171), Expect = 2e-95
 Identities = 189/195 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccctccgaggctccgctgccctgctgctcccacttggcaatgcccatccttctagact 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tcccctccgaggctccgctgccctgctgctcccacttgacaatgcccatccttctagact 260

                                                                       
Query: 61  gcagagctcatgttccccagggcctatctcttccctaaggttttctcctggctgaggctc 120
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 261 gcagagctcatgttccccagggcctatctcttctctaaggttttctcccggctgaggctc 320

                                                                       
Query: 121 aggctgccacgtttctcactcctccacggtctccctggactgagcacatctatccaagtg 180
           |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 321 aggctgtcacgtttctcactcctccacagtctccctgggctgagcacatctatccaagtg 380

                          
Query: 181 gcttcctgtgtctcc 195
           |||||||||||||||
Sbjct: 381 gcttcctgtgtctcc 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)