BAC Information

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BAC

Clone NameMSMg01-419K19
Chromosome1 (Build37)
Map Location 168,292,231 - 168,292,660
singlet/doubletsinglet
Overlap genenone
Upstream geneIqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K19.T7 (MSMg01no419_k19.b1)MSMg01-419K19.TJ (MSMg01no419_k19.g1)
ACCAG514720AG514721
length786785
length of high quality
(start - end)		---430 (64 - 493)
definitionCHROMAT_FILE: MSMg01no419_k19.b1 PHD_FILE: MSMg01no419_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:17 2005CHROMAT_FILE: MSMg01no419_k19.g1 PHD_FILE: MSMg01no419_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCAGACATAACCGATCTTTACGAACGGCGTCTACCCATAAGCCGCCGA
CAAACGAAAACCCACTAAAACTAGGCAACCCGCCCCGCTGGGATCAAACG
TCGCATTGTAAACACCCCTCCACAGGTTATCTCCATACTCCCCCTGATCT
TTTCGCGGCCCCCTATTAATATTGACGGCGCTCTCAACCGTTACACGAAA
TGCCCCGCAGGCCAAAGAATTAAGACCCTTTACAGCTCGTCGAGACACTT
AAATTCGACGCGCCCCACCCACAATGTCCAAAACTCCCTCCCCAGACCTT
CACCGTACATCAACGCGGCTTTAAAAGGGGAAGAGGAAAGACCCCAACTA
GATCCTTGATTGGGACAAAACAAAACGTGGAATATGCTTCCCCCAATTCC
CGCCCGACCGTTTCGTCGCCCCAAGCACGTATGCAAGGGACGGGTCGGAG
CGTTATGCACCAAGCACGCCCTTTTTCCCCTTTTACCGGCCCCGGGCGGG
GGATTGTACAGATAGCGCTTAAACCCGGAGACCTCCGCCGATCAATTAAA
CGCCGACCGCTTATCCAACCGCCGGGGCCAAAGACACAAGGTTTTATACG
CGCGTCGCCTCCCATATATTTCCGCGCTCCAGGGTCGTCGCCCCCCTTAT
GTATGTTCCCGCCTTCGGCCCCCCCACGTTTTATGCGCCCCCTGGGCGAT
GGATCCCACAGTATTATGCACCCGTTTCCCCGTTTGTTCATTTAGAGAAC
GCGCGCGATGGGGGCGGGTTAATTAATAATCCACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTAGGAGTCAGTGCTGTCCTCCCACCATGGAATCCAA
CTATCAAACTCAAGTTTCCAGGCTTGTAATTTATCCATGGAGCCATCTTG
CCCACCTAAGTCATGATGCTTTCACACATTATTAATTAGTAATATTAAAC
CAGTCTTAGTCTGCACTCCTATGAGATGATAGAATCAAGAGTGTGTGTAT
GATTATTTTTTTAAGGACACTGTGCTGGTTGGACTTTTGTCAACTTACAT
CAAACCTAGAGATGTCTAGAAAGAGAAACCTCCATTGAAAAATGTCTGCA
TCAGATTGCCTATAGGCATATCTGTACGACATTTTCTTGATTAATGATTG
ATATAGGAGGGAGGTCCCAGCCTGTCGTGGATAGTGCCACTCCTGGGCAG
GTGCTTCTGGGGGGGATATAAGAAAGCAGACTGAGCAATCCATGAGGAGC
AAGGCTTTAAGCAGCATTTCTCCATGGTTTCTGCTTCAGTTCCTGTAGGG
GGCACAGAAAAAGAGTGAACACAGTCTGTTATGGTTAACACACAGGGTTG
TTCTTCCAGGGGAAGAAAACAAAACCTGTTTTCCCCCAAAAAGGCCGGAA
CAGAAATTTTACTCCCCTAATGGACTAAGTCTATTGGGTGGGTAAAGAAA
TTTTCTGCACCGAACCTCTCCCAACCCTTTGTTAATTTTGTTTTTCTCCA
ATTCGGCAAACCGCCTCTGTCTTTTTATTCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k19.g1 MSMg01no419_k19.g1 CHROMAT_FILE:
MSMg01no419_k19.g1 PHD_FILE: MSMg01no419_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:17 2005
         (430 letters)



>mm_chr1_168292161_168292990
          Length = 830

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggagtcagtgctgtcctcccaccatggaatccaactatcaaactcaagtttccaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaggagtcagtgctgtcctcccaccatggaatccaactatcaaactcaagtttccaggc 441

                                                                       
Query: 61  ttgtaatttatccatggagccatcttgcccacctaagtcatgatgctttcacacattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtaatttatccatggagccatcttgcccacctaagtcatgatgctttcacacattatt 381

                                                                       
Query: 121 aattagtaatattaaaccagtcttagtctgcactcctatgagatgatagaatcaagagtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 aattagtaatattaaaccagtcttagtctgcactcctatgagatgatagactcaagagtg 321

                                                                       
Query: 181 tgtgtatgattatttttttaaggacactgtgctggttggacttttgtcaacttacatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgtgtatgattatttttttaaggacactgtgctggttggacttttgtcaacttacatcaa 261

                                                                       
Query: 241 acctagagatgtctagaaagagaaacctccattgaaaaatgtctgcatcagattgcctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctagagatgtctagaaagagaaacctccattgaaaaatgtctgcatcagattgcctat 201

                                                                       
Query: 301 aggcatatctgtacgacattttcttgattaatgattgatataggagggaggtcccagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aggcatatctgtacgacattttcttgattaatgattgatataggagggaggtcccagcct 141

                                                                       
Query: 361 gtcgtggatagtgccactcctgggcaggtgcttctgggggggatataagaaagcagactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtcgtggatagtgccactcctgggcaggtgcttctgggggggatataagaaagcagactg 81

                     
Query: 421 agcaatccat 430
           ||||||||||
Sbjct: 80  agcaatccat 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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