Query= MSMg01no419_n21.b1 MSMg01no419_n21.b1 CHROMAT_FILE:
MSMg01no419_n21.b1 PHD_FILE: MSMg01no419_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:32 2005
(361 letters)
>mm_chr1_76735446_76736206
Length = 761
Score = 648 bits (335), Expect = 0.0
Identities = 352/363 (96%), Gaps = 10/363 (2%)
Strand = Plus / Plus
Query: 4 aggtttatcagacatggaaatgcataaaagtttttgtagctcagtatgataatttaatgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aggtttatcagacatggaaatgcataaaagtttttgtagctcagtatgataatttaatgt 263
Query: 64 tctatagttatttataggtatccttattttctctctccctggttattatccctcccccac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctatagttatttataggtatccttattttctctctccctggttattatccctcccccac 323
Query: 124 tgtcttagttagagtttcattgctgtgtagacaccatgatcaaggcaggtcgtacaaagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcttagttagagtttcattgctgtgtagacaccatgatcaaggcaggtcgtacaaagg 383
Query: 184 ctaatgttcattggggctggcttacagtttcagaggttcagtctattatcatcatggtgt 243
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 ctaatgttcattggggctggcttacagattcagaggttcagtctattatcatcatggtg- 442
Query: 244 tttt-----catggcagcacgcaggcagatattgtactagaggagcagagagttctgtat 298
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ----ggaagcatggcagcacgcaggcagatattgtactagaggagcagagagttctgtat 498
Query: 299 cttgatccgtgggcaacagaaggtgactgattcctgcagggagtcaggaagagcatctct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttgatccgtgggcaacagaaggtgactgattcctgcagggagtcaggaagagcatctct 558
Query: 359 tct 361
|||
Sbjct: 559 tct 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_n21.g1 MSMg01no419_n21.g1 CHROMAT_FILE:
MSMg01no419_n21.g1 PHD_FILE: MSMg01no419_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:32 2005
(538 letters)
>mm_chr1_76909306_76910246
Length = 941
Score = 992 bits (513), Expect = 0.0
Identities = 533/541 (98%), Gaps = 3/541 (0%)
Strand = Plus / Minus
Query: 1 ccgttactgtaaatcactaccagatgtcaaatagcaaaatattcattactcccttaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccgttactgtaaatcactaccagatgtcaaatagcaaaatattcattactcccttaaata 682
Query: 61 atagagttgattaatgaggcacatttacattgtggaatcttggtctctgtcctaagtaga 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatagttgattaatgaggcacatttacattgtggaatcttggtctctgtcctaagtaga 622
Query: 121 aagagtttaaggagccttttaaaaaatcatgcagatggggaaataattttaactatcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagtttaaggagccttttaaaaaatcatgcagatggggaaataattttaactatcatg 562
Query: 181 cttcaaaggcaaagtaaatattaggcatcttggggcaggatttggtcatctaaggagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcaaaggcaaagtaaatattaggcatcttggggcaggatttggtcatctaaggagtaa 502
Query: 241 taacttccaaatgattctggcctttattctcaaagacaagatgtagtagctgtgtaatag 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacttccaaatgaaactggcctttattctcaaagacaagatgtagtagctgtgtaatag 442
Query: 301 acagaaagatagatatgtttctagacagtcgatagctcacacacactaagggtttgggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaaagatagatatgtttctagacagtcgatagctcacacacactaagggtttgggat 382
Query: 361 atggcccaggtaaatctgggaatggtgtgcacattttaaatggcaacctgcatgctctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcccaggtaaatctgggaatggtgtgcacattttaaatggcaacctgcatgctctgc 322
Query: 421 cccagttacccaacaaatcaattcac---atgatattagtcacaataaacgttacccaaa 477
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 321 cccagttacccaacaaatcaattcacatgatgatattagtcacaataaatgttacccaaa 262
Query: 478 agagtacccaccttgtctaccgaatgagtagtctttgttagaaaaaaatacccaatttag 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtacccaccttgtctactgaatgagtagtctttgttagaaaaaaatacccaatttag 202
Query: 538 t 538
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 941
Length adjustment: 10
Effective length of query: 528
Effective length of database: 931
Effective search space: 491568
Effective search space used: 491568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
