TTCCCTTTNCTCTATAATTGCGGCGCGAAANGAGACCTAAATCGCAAGAG
AACGCGGAATTCCCGTGTTCTCCCTGAACTTTATCATGGAAGGGTTTTGG
ATTTTATCAAATGTTTTCTCAGCATCTAACAAGATGATCATGATCATGTG
TTTTTTTTTTTTCTTTGAGTTTGTTTATATAGTGGATTATGTTGATGGAT
TTCCATATATTAAACCATCCCTGCATCCCTAGAATGAAGCCTATTTTCTC
ATGATGGATGTTTGTTTTGATGTGTTCTTGGGTTTGGCTAGTGAGAATTT
TTCNNNNNCCCNNCCCCCCTTTTTTTTTTTCCNCCCCCCCNTCCCCCCCN
CCCCNNNNCTTTTTTTCTCCTCCCCCCGCTNCTGGGGGCCCCCCGCCCCC
CGCTCTTCCCTTTTCCCCCCCCCCCCCCCCCCCCTTCCCCNTNTCTTTTT
CTTTCTTTCTTCCTCCTCCCCCCTCCCGCCTCGCCCTTTTTTTCTTTTTC
CTTTCTCCTTTTCNTCTTTTCTCTCCTTTTTCTTACTTTCTCCGTCTTTT
TCTTCCCCCATTATTTTTCCCCCCCCCCTCCCTCTTCCACGATTTATCCT
TTCTTTTTTTCTCTCATTCCCTCCCCTTCCATATATTTTCTTTCCCTATT
TCCCACCCCTCCCTCTTCTCTTTATTCTCTCCCCCCCTTTTTTTCTTTTC
TTTTTCCCCCCACGTTTTTTTTTTTTTTTTACCCCCTCTTTTCTCTTTCT
TCATTTTTTCCCCCTTTTCCTCCCTTTG

TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTTACAATGTCAAACTCTGACAAATACCCCA
GGCTTTTGATTTTCTTTTTATGTGTGTTTTGTATGTTTTATTTTGTTGAG
AATGAAAGTACCAATGTTAGATATCAGGTGATAGGGAATTTAGTTAGGTC
TTTGGTCTACTGCAGCATTTGTCACTTAGTGTCTAAATACAAATACATAA
GTAACTAAGTGATAATATTCCTGGAAAATAGAAATAGTTCATATTTAATT
TAATTTCATTGTATGTTTTGACCGAATTATGGCTAATAAATACATAAAAA
CCAGCTATTGCTTGAGCCATGATGAGATGAATGGCTGGTATATTAGTGGA
GCAATAGTGAGGAGATGTAAGCATCTTAGACATCTAGAACCTTANNAGGG
TAAACAAATAAATGTCTAGGACTGACTGAGTTATTAGTCAGTGTAAGGAA
GAATACTTGCATTCCATACCCTCTATATTATATTATACNACTTGTGGGTA
GAGATTGTTGAAAGTCTCCTGATTTTTGATCAGAAAATGAAATAATGGAN
CCATTTGTATGAATATTAAAATTCCCGAGAAATTGTCTGGATTTGAAGGT
TTTTTCTTTTGGAAAAGGACGGGGGTCCTATCTTTGAGCCCCTAAACCGG
TTAAAGAACCGACTTTGGGATTTTTTGGCAACGCCCAACTAAATGGTTTT
TTTTTTGG

Query= MSMg01no419_p23.g1 MSMg01no419_p23.g1 CHROMAT_FILE:
MSMg01no419_p23.g1 PHD_FILE: MSMg01no419_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:42 2005
         (420 letters)



>mm_chr1_47584609_47585428
          Length = 820

 Score =  696 bits (360), Expect = 0.0
 Identities = 409/430 (95%), Gaps = 15/430 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttacaatgtcaaactctgacaaataccccaggcttttgattttcttttt-atgtgt 59
           |||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||
Sbjct: 201 tctcttacaatgtcaaactctggcaaataccccaggcttttaatttt-tttttaatgtgt 259

                                                                       
Query: 60  gttttgtatgttttattttgttgagaatgaaagtaccaatgttagatatcaggtgatagg 119
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttttgtatgttttgttttgttgagaatgaaagtaccaatgttagatatcaggtgatagg 319

                                                                       
Query: 120 gaatttagttaggtctttggtctactgcagcatttgtcacttagtgtctaaatacaaata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaatttagttaggtctttggtctactgcagcatttgtcacttagtgtctaaatacaaata 379

                                                                       
Query: 180 cataagtaactaagtgataatattcctggaaaatagaaatagttcatatttaatttaatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cataagtaactaagtgataatattcctggaaaatagaaatagttcatatttaatttaatt 439

                                                                       
Query: 240 tcattgtatgttttgaccgaattatggctaataaatacataaaaaccagctattg-cttg 298
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 440 tcattgtatgttttgaccgaattatggctaataaatacatgaaaaccagctattggct-g 498

                                                                       
Query: 299 agccatgatgagatgaatggctggtatattagtggagcaatagtga-ggagatgtaagca 357
           ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 499 agctatgatgagatgaatggctggtatattagtggagcaatagtgaaggagatgta-gca 557

                                                                       
Query: 358 tcttagacatctagaaccttanna-------gggtaaacaaataaatgtctaggactgac 410
           |||||| ||||||||||||||  |       |||||||||||||||||||||||||||||
Sbjct: 558 tcttagccatctagaacctta--aatcaaaagggtaaacaaataaatgtctaggactgac 615

                     
Query: 411 tgagttatta 420
           ||||||||||
Sbjct: 616 tgagttatta 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)