BAC Information

Click to search

BAC

Clone NameMSMg01-420A11
Chromosome1 (Build37)
Map Location 137,238,079 - 137,238,398
singlet/doubletsinglet
Overlap geneLmod1
Upstream geneLOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a
Downstream geneTmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420A11.T7 (MSMg01no420_a11.b1)MSMg01-420A11.TJ (MSMg01no420_a11.g1)
ACCAG514991AG514992
length833728
length of high quality
(start - end)
88 (388 - 475)320 (323 - 642)
definitionCHROMAT_FILE: MSMg01no420_a11.b1 PHD_FILE: MSMg01no420_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:44 2005CHROMAT_FILE: MSMg01no420_a11.g1 PHD_FILE: MSMg01no420_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNGGGGGAAGGGGGGGGGGNNGGGAAGAANGANAAC
CAAAAAATTGGGGGGGGGAAAGAANNANGATAGTCGTGACCCGCCGGNAA
NNNNAANAANTTTACANTATCCGCGGGNANNNGNANAGNNACAGNGNACN
CACANACANAAAANAAATAAACACACCNGANANNNAAAGGCACNNGCCAA
AGAAANAGGGAANNCCAGGGCAGAAGAGGGAGCGGGCCCNNCCGACCCAC
AGGGGGACACNCCCCANCCACCGAGCAGCGGGGNCCNACAGCCANGNAAA
GGGCTACGNCCCAGGGACCGGCAGGGCGGGCCCACCGGAGCAGGGNAGCG
GGAAACAGAGCCNCGGNCTTTTTTTTTTCTCGNGGGAGACACAGTTTGCC
TCGGACTGTCTATGTGAGCCACAGTGGGCAGCAGTGGCTCTCACCCTTTC
TCAGTTGTCACATGGGGACTGTTCTCTGATAAGTGCTCCCCAGCTGTGTG
CAGCTTCCACAAGGAAACTGTCCTGGCCCTATCTATCAGCAGGTGACTTC
CTGGCTTGTCACTCAGCAAAGCGGACATGCACATTCTTTAAGCAAGTGAG
CAAAGGTAAATGTGAGAGAGACGCGGACCGCTGGCACGCTAAGGAGGCAC
ATGCCGTAAAAATAAGCCTGCGAAATTAGTGAAATGGTGCAAAAGCAGCC
ACTGCTCTTAGAAGAAGACCGATTTTAACGGAAGGTCCACCGGGCACTAC
AAAACATTCCCAATTGGTGGGTCCCTGGGACACCTAGCAATCACATATTA
ACAGTGTGTTATAACAGGGGGAATCAATGATGN
TGTGTGAGGCCTGGAGGNCGCCTGGTTTCAGTATCATGGAGGTGAACTAT
AGAAGGTTACAAAAAACTCCAGGTTAGCTAAGGCAGCATAGTGAGGCCAG
GTCTCAACAAATCTACCCCAAAAAAGAGCAGTGTGCTACTTCTGGCTGGC
TTTCTTTAAAATATAACTTATAACAGGCTGTGGTGGTATGTGGCTTTAGA
GTCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGACTTTGAGGCCATT
CTGGTCTGCAGAGATCATTTCAGGACAGACAGAGCTACACCAGAGAAGTC
CTGTCTTGATAATTAAATGATTATATACATATACATATATGTGTGTGTGT
GTGTGTGTGTGTGTGTGTATTGAAGTATGAATTTCCCTCTGTCTTTTAAA
AGTTAGCATAATTATAATGCATTTCATTATGGTATTTTTGGGAGCATTTC
ATCCTTTTCCTTTGTTCTTATTCCTTCTTCCCCACCATGGCTCTCCCACA
TCCCTCTCGTGGAGAGGATGACTCTAACCCCCCAGATAGCTCTCCCCCTG
CTTTCCAGTCTCATGCACCCCATGCTGTCTTCTTCCCTGATTAAGGATCT
CTGCCTCCTTTGAGCAGAGACTTCTCTGTNTTCCTGTTGTGCCCGAGATT
ATTCTGTGTACATAGACATTCCACCAAGCTTTCTTTCCTGCCTATCCCAC
TAGTCATTTTCTCCACTCATTAATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_a11.g1 MSMg01no420_a11.g1 CHROMAT_FILE:
MSMg01no420_a11.g1 PHD_FILE: MSMg01no420_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:44 2005
         (320 letters)



>mm_chr1_137237879_137238598
          Length = 720

 Score =  613 bits (317), Expect = e-180
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatacatatacatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgaagtatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatacatatacatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgaagtatgaat 260

                                                                       
Query: 61  ttccctctgtcttttaaaagttagcataattataatgcatttcattatggtatttttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccctctgtcttttaaaagttagcataattataatgcatttcattatggtatttttggg 320

                                                                       
Query: 121 agcatttcatccttttcctttgttcttattccttcttccccaccatggctctcccacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatttcatccttttcctttgttcttattccttcttccccaccatggctctcccacatc 380

                                                                       
Query: 181 cctctcgtggagaggatgactctaaccccccagatagctctccccctgctttccagtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcgtggagaggatgactctaaccccccagatagctctccccctgctttccagtctc 440

                                                                       
Query: 241 atgcaccccatgctgtcttcttccctgattaaggatctctgcctcctttgagcagagact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaccccatgctgtcttcttccctgattaaggatctctgcctcctttgagcagagact 500

                               
Query: 301 tctctgtnttcctgttgtgc 320
           ||||||| ||||||||||||
Sbjct: 501 tctctgttttcctgttgtgc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)