BAC Information

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BAC

Clone NameMSMg01-420B04
Chromosome1 (Build37)
Map Location 132,512,548 - 132,512,892
singlet/doubletsinglet
Overlap geneZp3r
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2, Cd55
Downstream geneC4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B04.T7 (MSMg01no420_b04.b1)MSMg01-420B04.TJ (MSMg01no420_b04.g1)
ACCAG515024AG515025
length723723
length of high quality
(start - end)
574 (83 - 656)566 (73 - 638)
definitionCHROMAT_FILE: MSMg01no420_b04.b1 PHD_FILE: MSMg01no420_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:47 2005CHROMAT_FILE: MSMg01no420_b04.g1 PHD_FILE: MSMg01no420_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAGAG
GGCGGAATTCTCACCGGTGGCAACAAAAATGGGAGAGAAGCACCTGAAAA
AATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTC
CTCAGAAAACTGGATATAGTACTTTTTTTTGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCC
AGATGCCCCTCAACAGAGGAATGGATACCGAAGATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACT
CAAGAAAAATGAAGACTGAAGTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCTGGGAATCAGGCCTCAGATCTAC
TTTATCCAGAATATTCCGTACCAGTCATGCTATTATTGTACCAGGGGCCA
AGCCTGGCCTCACAGCTCAGTACTACTGCATGCAGAGTTCAGTACTGGGT
AAGACCACTGATCTCTTTTCTTTCTCAGTAGTAGTACATCTGGCATAATG
AAAGCTAGCCAGCAGCAAGTTTCCTTTTTTGTTTGAGATTTATTTGTTTT
ATATCCTGTAGCCAATGTGTGTGGTGTCTTTAGCTCTTACTAATTATGAT
TATGGGTAACCAAGAGCAATGCTAATAGCCTACTTTGTTTGGGGGTTGCT
CTGACCAACAACTCCCTGAGCTTGGAATTGAGATGTTGACTTAATAACCC
ATGTGTTGTGGGAGCAATATTGTCCATCCATTTGGGGTAATTCTCTTCAC
ATGACTTTAAAAATTACATTCGCTTACAAACTAGTGGGATGCTGTAAGTG
TTCTCCATACATCCTTAGTTACGGTTAGTGATTCTTATCCCTTCTTTCCC
TGCCTACTTGTCACCATCCCCACTTAAACCTTTAGCTCCCAGCATGCCTG
TTCTTGCTTATCACATATGTTTTACTATTCCTTTTAATTATATTTTCACT
TGGGTTGAAGATCATAGGTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b04.g1 MSMg01no420_b04.g1 CHROMAT_FILE:
MSMg01no420_b04.g1 PHD_FILE: MSMg01no420_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:47 2005
         (566 letters)



>mm_chr1_132511927_132512892
          Length = 966

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 222 ttgttttatatcctgtagccaatgtgtgtggtgtctttagctcttactaattatgattat 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ttgttttatatcctgtagccaatgtgtgtggtgtctttagctcttactaattatgattat 907

                                                                       
Query: 282 gggtaaccaagagcaatgctaatagcctactttgtttgggggttgctctgaccaacaact 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gggtaaccaagagcaatgctaatagcctactttgtttgggggttgctctgaccaacaact 847

                                                                       
Query: 342 ccctgagcttggaattgagatgttgacttaataacccatgtgttgtgggagcaatattgt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ccctgagcttggaattgagatgttgacttaataacccatgtgttgtgggagcaatattgt 787

                                                                       
Query: 402 ccatccatttggggtaattctcttcacatgactttaaaaattacattcgcttacaaacta 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccatccatttggggtaattctcttcacatgactttaaaaattacattcgcttacaaacta 727

                                                                       
Query: 462 gtgggatgctgtaagtgttctccatacatccttagttacggttagtgattcttatccctt 521
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 726 gtgggatgctgtaagtgttctccatacatccttagttacagttagtgattcttatccctt 667

                                                        
Query: 522 ctttccctgcctacttgtcaccatccccacttaaacctttagctc 566
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctttccctgcctacttgtcaccatccccacttaaacctttagctc 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)