BAC Information

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BAC

Clone NameMSMg01-420O07
Chromosome1 (Build37)
Map Location 37,324,301 - 37,324,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3
Downstream geneInpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420O07.T7 (MSMg01no420_o07.b1)MSMg01-420O07.TJ (MSMg01no420_o07.g1)
ACCAG515650AG515651
length742730
length of high quality
(start - end)
146 (346 - 491)240 (66 - 305)
definitionCHROMAT_FILE: MSMg01no420_o07.b1 PHD_FILE: MSMg01no420_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:52 2005CHROMAT_FILE: MSMg01no420_o07.g1 PHD_FILE: MSMg01no420_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNGGGGGGGGGGGTTCAAAAACGAAAGACCGGGAGGANAAAATTAA
AGTGGGGGCCAAAGAAACACATTCTTACCGCNGNGGAANNNNNNATTCCN
GACCAGGGGGNAGANAGCANNNNGAACNNNNCCCCCGNNGGGGGGCCCCC
CAACCAAGNAGGGNCNNNCCGCAAGAGAGGAGGNAAAGANCAGGGGGNNC
ANNCGGGGAACCGACNNGGGCNGCAANANAAANNCCAGCNNNAAGNCGGG
AAGAANAGCNCCNNNCNTATAAAGCGCAGGGANGNNCNGNNCNANNCGCC
AAACCGGANAAGGGCGGAGGNNCAGAACAAAANATCTTTTTTCTCTCTGC
TCTGGCTCCTTTTCTCTCTCTCATTTTCTTCTCTTTCTTCTTTTCTTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTGCATCTC
TGTCTCTCTCTTTTATTTGGGGCTATAGTTATTACTATAGGGTGATTTGT
TTTTTATTACTATCATTGGTGCAATATTTTTATTGTTTAAAATTTGTATT
ATTCAGAATAAAATTTTATTTTTATTATCTAAAATGAATTAAAATGGGTT
CTTCCTCCCAGTCCCATGCTCCCAGAAATAAGGCTCAGACTCAAAATATA
CTTACAATACCTTGGCCATACAGCTAGGCTCTCCTCCGGCCAGAAGCACA
ACTTGAGATGAGCCATCTGGTTTAGCCCACATTCTGCCATGG
GTGTGAGGCCTGGNGGNCGCCTGTTTCCGACTTGAGGNGAACTATAGAAG
TTACGAGAAAGTGTCTCGTAAACATATCTGTCCTTTCTCTGAGCTTATTT
ATCCTTTTGCCCATTTTCCAGATACTTACTCATAGCATGAGTGTGACTCA
ATGACCTTCACATTGCAGAATCTAATGCTATTTGATTTTAAAAAAAAAAA
AATTTCTAGATGGCTTTCATTTTGGCCACTGGCCAAACCATTTTGTGTCC
CTTTGACATAGCCATTTGTGGTTTTCCAGCATTTTCTATCTTCACAAGAT
GGCCTATTTGTANTGTTTATTTTTCTATGCACCAGCTCCAGAATCATCCT
GGTTCTTTTAATTAGAGAAAGATATTTAGATACCAGGATGGGTGTTTATT
GTGCCCTTTGCAAAAGATATTAATCAGAGCTAGAAATCTATATTTGTACA
CACACACACACACGATCTCTGTATCTGTCTGTCTGTTATGTATATATGTA
TATAAAGAAACACATTTATATTTTAGGGTTTGTTCTTGATCCCTGCGATG
GCAGCTTTTAATTCTCAACTTGACCCAACATTGGAGGAGAGGCTCAATGA
AAGTCTGTCTACACTGTTATATTCTGTGCTCTGTACGGGAAGGGCTGTCT
TTTCTGCGTTAACCTGTGCTGTGCATCCTAATGACTGTCCATACTTTGTC
TACCTTGGGTCTCGAAGCTACTGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_o07.g1 MSMg01no420_o07.g1 CHROMAT_FILE:
MSMg01no420_o07.g1 PHD_FILE: MSMg01no420_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:52 2005
         (240 letters)



>mm_chr1_37324219_37324863
          Length = 645

 Score =  395 bits (204), Expect = e-114
 Identities = 231/246 (93%), Gaps = 13/246 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgtaaacatatctgtcctttctc-----tgagcttatttatcc---t-tttgcccattt 51
           ||||||||||||||||||||||||     |||||||||||||||   | |||    ||||
Sbjct: 324 tcgtaaacatatctgtcctttctctctcatgagcttatttatccggttgttt----attt 269

                                                                       
Query: 52  tccagatacttactcatagcatgagtgtgactcaatgaccttcacattgcagaatctaat 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tccagatacttactcatagcatgagtgtgactcaatgaccttcacattgcagaatctaat 209

                                                                       
Query: 112 gctatttgattttaaaaaaaaaaaaatttctagatggctttcattttggccactggccaa 171
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gctatttgattttttaaaaaaaaaaatttctagatggctttcattttggccactggccaa 149

                                                                       
Query: 172 accattttgtgtccctttgacatagccatttgtggttttccagcattttctatcttcaca 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 accattttgtgtccctttgacatagccatttgtggttttccagcattttctatcttcaca 89

                 
Query: 232 agatgg 237
           ||||||
Sbjct: 88  agatgg 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 645
Length adjustment: 9
Effective length of query: 231
Effective length of database: 636
Effective search space:   146916
Effective search space used:   146916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)