TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTAGATCCGCGGAAT
TCACTGTTAATATTTCTAATCTGGAGGTAAATATGAATTTTAGATAATAA
ATTTGCATAAAACTGTTAATGTACAGCATCAGTACAGAAACCCCCAATAA
GGAAAAGCACAGAGAATTCCAAAAATTAACCTATGGAAAAAAACATTGTA
AAGAATGAGAGATGTGGGAACTATTGAGATGCTTCAAACAGCTTGCTATT
AAACTTAAGTATAAGGAATATTTGTCATGTGTGTAATTCAGTGTTATAGG
CATCATATTCAATAGTTTTAAATACTGTTTACTGTGCTTTTCCATTTAGT
TATTCCATACTTATCAGGAATCAGTACTGACAAGTTACATGTAGAATTAT
TTTTGCTGGCACATGGATTAAGACAGAATAATAAATAAGCTAAATATTTA
TCATTATAATTATTATATCATTGGCATTATATTAGTGACATTAGTTATTG
AAAAGCAATGAAATTAATCTACATGAAATGTTCTTTAAATTCTCTATAAG
AGAATGAATAACTGGTGTTCTCGTCTCACTTTCTCGTGGTCTCTTTGGAG
ATGTTCATAAATGTTTCCTGATTTTTCCAAAGAAGGTGATTTTCCTCTGA
AGCCCTACAACACATCTTGTCTATAAAACATTTCTGAAATCTCACAAGGG
CTGTGAGGTTTGTACTTATTGATATTGCTGTCTTTATCTGCCCATATCCC
CCACTGGAAACAAAGCTTTCCCN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAATGTTGGTGTAGAAATATTTAGTGC
TGGATAAATTGTTTCTATGCTTAAAATGTCCTTACTGAGGTGAGGTCATT
GTGGCTAAAAGGCAAAATTGTATAATTTTAATTCACACTATCTAGGTGAA
CATTTGTATTTATTTATTTACTGAGTGTTGGGGAATAGAACCTAGAGCCT
TGCCAATGCCAGGAAAGTGATCAGTCTCTGAAGGAGAAAGAGTGGTGTGT
GGAACCCACACACCCCCGTCACATCTTTTCTGGACACTAAAATTTTTACA
AATATTTTCTTCTCCCAATCCTGCTATTTCAAGGTTATATTTCTTAGTCC
AGAGGAGTACATTTGTTTCCAACTACAGTTTTTATTGCTTGTTATCGTTT
GTCTTTTCTGACTTCTAGATAAAATGGAGAAACTGAGAGAACGCATATCC
CAAGCAATTAAAAATGAGCCAAATGTATTAAGTGGTGGAAAAGAGGAGAA
TTGATGTTAGATTGTAATTGGCCACTGAGTGTGTTGTCCTTTGCTTGATG
ACTGTCTACTATCCCACATTCAAAACTTCAGATATTCCAAAATTGCCAGG
CGATATCTAACTCCTCTTATCCCTTGATCACCCTCAAAGGGGAAACCCTC
TATTATTTCTTAAATCCCGGGGACCAAAAACAAACATCCTTGGACGTCCC
ATAATTCAACCCTTTTTACATCTTGGAA

Query= MSMg01no421_b11.b1 MSMg01no421_b11.b1 CHROMAT_FILE:
MSMg01no421_b11.b1 PHD_FILE: MSMg01no421_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
         (551 letters)



>mm_chr1_42241513_42242463
          Length = 951

 Score = 1027 bits (531), Expect = 0.0
 Identities = 546/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggtaaatatgaattttagataataaatttgcataaaactgttaatgtacagcatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaggtaaatatgaattttagataataaatttgcataaaactgttaatgtacagcatcag 260

                                                                       
Query: 61  tacagaaacccccaataaggaaaagcacagagaattccaaaaattaacctatggaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagaaacccccaataaggaaaagcacagagaattccaaaaattaacctatggaaaaaa 320

                                                                       
Query: 121 acattgtaaagaatgagagatgtgggaactattgagatgcttcaaacagcttgctattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattgtaaagaatgagagatgtgggaactattgagatgcttcaaacagcttgctattaa 380

                                                                       
Query: 181 acttaagtataaggaatatttgtcatgtgtgtaattcagtgttataggcatcatattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttaagtataaggaatatttgtcatgtgtgtaattcagtgttataggcatcatattcaa 440

                                                                       
Query: 241 tagttttaaatactgtttactgtgcttttccatttagttattccatacttatcaggaatc 300
           ||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttttaagtactggcaactgtgcttttccatttagttattccatacttatcaggaatc 500

                                                                       
Query: 301 agtactgacaagttacatgtagaattatttttgctggcacatggattaagacagaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtactgacaagttacatgtagaattatttttgctggcacatggattaagacagaataat 560

                                                                       
Query: 361 aaataagctaaatatttatcattataattattatatcattggcattatattagtgacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaataagctaaatatttatcattataattattatatcattggcattatattagtgacatt 620

                                                                       
Query: 421 agttattgaaaagcaatgaaattaatctacatgaaatgttctttaaattctctataagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttattgaaaagcaatgaaattaatctacatgaaatgttctttaaattctctataagag 680

                                                                       
Query: 481 aatgaataactggtgttctcgtctcactttctcgtggtctctttggagatgttcataaat 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 aatgaataactggtgttctcgtctcactttcttgtggtctctttggagatgttcataaat 740

                      
Query: 541 gtttcctgatt 551
           |||||||||||
Sbjct: 741 gtttcctgatt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_b11.g1 MSMg01no421_b11.g1 CHROMAT_FILE:
MSMg01no421_b11.g1 PHD_FILE: MSMg01no421_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
         (251 letters)



>mm_chr1_42384296_42384946
          Length = 651

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgttggtgtagaaatatttagtgctggataaattgtttctatgcttaaaatgtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caaatgttggtgtagaaatatttagtgctggataaattgtttctatgcttaaaatgtcct 392

                                                                       
Query: 61  tactgaggtgaggtcattgtggctaaaaggcaaaattgtataattttaattcacactatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tactgaggtgaggtcattgtggctaaaaggcaaaattgtataattttaattcacactatc 332

                                                                       
Query: 121 taggtgaacatttgtatttatttatttactgagtgttggggaatagaacctagagccttg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caggtgaacatttgtatttatttatttactgagtgttggggaatagaacctagagccttg 272

                                                                       
Query: 181 ccaatgccaggaaagtgatcagtctctgaaggagaaagagtggtgtgtggaacccacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccaatgccaggaaagtgatcagtctctgaaggagaaagagtggtgtgtggaacccacaca 212

                      
Query: 241 cccccgtcaca 251
           |||||||||||
Sbjct: 211 cccccgtcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)