Query= MSMg01no421_c05.b1 MSMg01no421_c05.b1 CHROMAT_FILE:
MSMg01no421_c05.b1 PHD_FILE: MSMg01no421_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:11 2005
(179 letters)
>mm_chr1_152713737_152714316
Length = 580
Score = 300 bits (155), Expect = 4e-86
Identities = 173/179 (96%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 1 agggaaa-cttatcagggaggaactgataaaacccacattgtcttcgcgccttttctaaa 59
||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 agggaaatcttatcagtgaggaactgataaaacccacattgtcttcatgtcttttctaaa 260
Query: 60 tacaagacagagtggggagaacacagatataaactgaacctttgaactccgaggagttag 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tacaagacagagtggggagaacacagaaataaactgaacctttgaactccgaggagttag 320
Query: 120 agaggtttgagggccttctccaacccctaaagggaagatgttatcacaagaggggctga 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggtttgagggccttctccaacccctaaagggaagatgttatcacaagaggggctga 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 580
Length adjustment: 8
Effective length of query: 171
Effective length of database: 572
Effective search space: 97812
Effective search space used: 97812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no421_c05.g1 MSMg01no421_c05.g1 CHROMAT_FILE:
MSMg01no421_c05.g1 PHD_FILE: MSMg01no421_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:12 2005
(509 letters)
>mm_chr1_152882303_152883211
Length = 909
Score = 938 bits (485), Expect = 0.0
Identities = 500/505 (99%)
Strand = Plus / Minus
Query: 5 aattccaactaactcatttcagttcactggctctttgctcctgactgtagcttacatgcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aattccaactaactcgtttcagttcactggctctttgctcctgactgtagcttacatgcc 650
Query: 65 aactttatcttctttatttcctatttcctaagcttggtggctgagtcggaaccctctgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aactttatcttctttatttcctatttcctaagcttggtggctgagtcggaaccctctgcc 590
Query: 125 acatattcacttcaaagctactcagtcttgccttaatactctcgcacatggaattagaga 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 589 acatattcacttcaaagctactcagtcttgccttaatactctcccacatggaattagaga 530
Query: 185 ggccgctcttcacagtgagctcttggcacagggcttgtcacacagaacagtctaacgact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggccgctcttcacagtgagctcttggcacagggcttgtcacacagaacagtctaacgact 470
Query: 245 ggttcactgcgctacctcggctcttctcactccgtctgagccacgggtttcacttgctct 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 469 ggttcactgcgctacctcggctcttcgcactccgtctgagccacgggtttcacttgctct 410
Query: 305 ctgctctgaccctgggtatccagcttgctccacagatttccttcctaagtgttcttggtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgctctgaccctgggtatccagcttgctccacagatttccttcctaagtgttcttggtc 350
Query: 365 ctggaattctagccatacccaagccccgattcacttcatccaacagaggagtccacacct 424
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 349 ctggaattctagccatacccaagcccttattcacttcatccaacagaggagtccacacct 290
Query: 425 ctacctgccaactagatggccatgactggacagtgaaccccacatcccattaccctggat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctacctgccaactagatggccatgactggacagtgaaccccacatcccattaccctggat 230
Query: 485 tcttttaaacaggctgatattccct 509
|||||||||||||||||||||||||
Sbjct: 229 tcttttaaacaggctgatattccct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
