BAC Information

Click to search

BAC

Clone NameMSMg01-421E09
Chromosome1 (Build37)
Map Location 40,288,366 - 40,288,606
singlet/doubletsinglet
Overlap geneIl1r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421E09.T7 (MSMg01no421_e09.b1)MSMg01-421E09.TJ (MSMg01no421_e09.g1)
ACCAG515939AG515940
length786807
length of high quality
(start - end)
253 (72 - 324)238 (83 - 320)
definitionCHROMAT_FILE: MSMg01no421_e09.b1 PHD_FILE: MSMg01no421_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:23 2005CHROMAT_FILE: MSMg01no421_e09.g1 PHD_FILE: MSMg01no421_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTCACCTGATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATT
CCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCTTTCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCTTCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGCAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACCGAATATGTGGTACATCTACTCAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAT
TGGATGGACCTGGAGGTCATCTTCCTGATTGAGTTATCCCCATTCCCTTA
AGGATCTCCTCCCTATGTTTCTCATTGATTATTGTATTTTAGCCTATATC
CTATGTATCCTTCGAATTTTTTATTTTTTCTTCCTAATTGCTCTGACCCT
CTCCACTAAACTGTCCTATTAATCTTCGCACCCCCATTTTCTCTCCTCTC
CATTGCTCATATAACTCTCTCCCTTTTTACTTCTCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCCANCACGGGGTGTNNNACTATTATTATTTTAAAA
CTCAGTGTGTTTTAAACTGTCTTACCATATGGATGAAGTTGGGCATCCAT
TCTCTAGGTTTAAAATAATTACTGATCATTACTTCTATTGCATTAGCAGT
TAGCTTTTGAGGACTTGCCTGTGTGTGGCCACAGGATACAAGGCAGGTGA
ATATTTACTGGCCGCCACCGGAAGATCCTGTGATGAGTGCCATGAAAGAG
TAAAGGGCTGTTTAGACGATTTAATGCTGTGCCCCGCCTTACTCTAACAA
TTGGNACTTTTTGATTTGAAAGGAGGGCGTCTCAGGCATGAGATGTATCT
ACTTATAGATCGGGCGCAGGATCGTAAAAGTTTGTGTTTGAAGAATCAGG
CCTATTGCCACACACCCATATTCTAGTAGTCTGATTGCTGATGCATAGTG
TAACCCTAATGTGACCTAATTATGAAAGGTACACCTGTCTCCCTATTCCT
GAATTAATCCTTGTTTCTTTCTAACATTCATACTGCTCTATTCTTTGGTG
GGTGAACGTAAACTTTCTTTTTTTTTATTATTTTTCTATCTACCAATTCC
GGTCCTTTTTATCATCTACATCTATTTTTTTTTTTCATAAACTCTAATTT
TCTATTTTTTTCATTCTCTTTTCTTTTTTTTACACCATATTTCTTTTTTT
TTCCTCTAAACCTATTTTTACCTTCCCCCTCTTATTTCTATCTCCTCTCC
TTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_e09.g1 MSMg01no421_e09.g1 CHROMAT_FILE:
MSMg01no421_e09.g1 PHD_FILE: MSMg01no421_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:23 2005
         (238 letters)



>mm_chr1_40288166_40288807
          Length = 642

 Score =  358 bits (185), Expect = e-103
 Identities = 226/241 (93%), Gaps = 4/241 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actattattattttaaaactcagtgtgttttaaactgtcttaccatatggatgaagttgg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 actattattattttaaaactcagtgtgttttaaactgtcttaacatatggatgaagttgg 260

                                                                       
Query: 61  gcatccattctctaggtttaaaataattactgatcattacttctattgcattagcagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gcatccattctctaggtttaaaataattactgatcattacttctattgcattagcagcta 320

                                                                       
Query: 121 gcttttgaggacttgcc---tgtgtgtggccacaggataca-aggcaggtgaatatttac 176
           ||||||||||||||||    ||||||||||||| ||||||  ||||||||||| |   ||
Sbjct: 321 gcttttgaggacttgctgtgtgtgtgtggccacgggataccgaggcaggtgaagaggaac 380

                                                                       
Query: 177 tggccgccaccggaagatcctgtgatgagtgccatgaaagagtaaagggctgtttagacg 236
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tggccgccatcggaagatcctgtgatgagtaccatgaaagagtaaagggctgtttagacg 440

            
Query: 237 a 237
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 642
Length adjustment: 9
Effective length of query: 229
Effective length of database: 633
Effective search space:   144957
Effective search space used:   144957
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)