Query= MSMg01no421_e23.b1 MSMg01no421_e23.b1 CHROMAT_FILE:
MSMg01no421_e23.b1 PHD_FILE: MSMg01no421_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:26 2005
(556 letters)
>mm_chr1_169644477_169645432
Length = 956
Score = 951 bits (492), Expect = 0.0
Identities = 537/554 (96%), Gaps = 6/554 (1%)
Strand = Plus / Plus
Query: 9 attcctggtacttttccccattaaaggactgacataatgacacagaagtgtctctctctg 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attcctggtacttttgcccattaaaggactgacataatgacacagaagtgtctctctctg 262
Query: 69 tctgtctgtctgcctctggtggtctctgtctccttgtctctctcagtctctttgtctttc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgtctgtctgcctctggtggtctctgtctccttgtctctctcagtctctttgtctttc 322
Query: 129 tctctctgtctgtctatg--tctctctgtctctgtctttctgtg--tctgtgtctctgtg 184
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| | ||
Sbjct: 323 tctctctgtctgtctatgtctctctctgtctctgtctttctgtgtctctgtgtctgtctg 382
Query: 185 tctgtctgtctgtctgtctg--tctgtctgtctgtctgtctgtctgtctctctctctctc 242
|||||||||||||||||||| ||| ||| ||| ||| ||| ||| ||||||||||||||
Sbjct: 383 tctgtctgtctgtctgtctgtctctctctctctctctctctctctctctctctctctctc 442
Query: 243 tctctcattctgtttcaggatgatccagggcttaatttgactgctcttctcttgaaaacg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctctcattctgtttcaggatgatccagggcttaatttgactgctcttctcttgaaaacg 502
Query: 303 cagcatgcgtccatggtggctctggattatgagtggaggaagttgctccctggctggtta 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagcatgggtccatggtggctctggattatgagtggaggaagttgctccctggctggtta 562
Query: 363 ggttaggctttcttctgctgtgagtgctctttcctccccccaaccctgctctatagtcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggttaggctttcttctgctgtgagtgctctttcctccccccaaccctgctctatagtcct 622
Query: 423 ctcccacagtccttttaacttttcctttgcccactttcttccagacaaggagctcctcta 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 623 ctcccacagtccttttaacttttcctttgcccactttcttccagccaaggagctcctcta 682
Query: 483 tgctctgagtttcagctgccatctctaggaaagtgacattctgatgtcaaacctactcag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgctctgagtttcagctgccatctctaggaaagtgacattctgatgtcaaacctactcag 742
Query: 543 tttacctcaaccct 556
||||||||||||||
Sbjct: 743 tttacctcaaccct 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_e23.g1 MSMg01no421_e23.g1 CHROMAT_FILE:
MSMg01no421_e23.g1 PHD_FILE: MSMg01no421_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:26 2005
(521 letters)
>mm_chr1_169824817_169825737
Length = 921
Score = 874 bits (452), Expect = 0.0
Identities = 482/492 (97%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 30 ccacttggtgtttggggaactaagatgcatttccttctcatctgaattcagaaatgtttc 89
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 921 ccacttggtatttggggaactaagatgcatttccttctcatctgaattcagaaatttttc 862
Query: 90 aggttaaaaaaacataaactcagcaatcctcgctaccctggaggctcagacaggaggatc 149
||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 861 agg-tcaaaaaacataaactcagcaatcctcgctactctggaggctcagacaggaggatc 803
Query: 150 acaagttcaaggcctgcgtgggctatagagtgagttcaagagcaacttaagtgagaccct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 acaagttcaaggcctgcgtgggctatagagtgagttcaagagcaacttaagtgagaccct 743
Query: 210 acttacaatttaaaaaataaataaataaacaaaagagagcagagacctagcatgcttttg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acttacaatttaaaaaataaataaataaacaaaagagagcagagacctagcatgcttttg 683
Query: 270 gcactaaggtcaatccccgtcactgaaagtaagtataattaagtagttgccttagttttt 329
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 682 gcactaaggtcaatccccgtcactgaaagtaaatataattaagtagttgccttagttttt 623
Query: 330 gaggaccaattcctgcgggtcttcagggatgacggaccagctatttggccccagagacgt 389
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 622 gaggaccaattcctgcgggtcttcagggatgatggaccagctatttggccccagagacgt 563
Query: 390 ggataaaaggtcccccttcctttctcacccctgcttctttttacttccattcccagtcct 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 562 ggataaaaggtcccccttcctttctcacccctgcttctttttacttccattcccagccct 503
Query: 450 gagatggaattattttaaatttagagcattctttctaaattttcagctctttggaaaaag 509
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagacggaattactttaaatttagagcattctttctaaattttcagctctttggaaaaag 443
Query: 510 cagccaaaatgc 521
||||||||||||
Sbjct: 442 cagccaaaatgc 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
