BAC Information

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BAC

Clone NameMSMg01-421F01
Chromosome1 (Build37)
Map Location 128,879,120 - 128,879,591
singlet/doubletsinglet
Overlap genenone
Upstream geneE030049G20Rik
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421F01.T7 (MSMg01no421_f01.b1)MSMg01-421F01.TJ (MSMg01no421_f01.g1)
ACCAG515971AG515972
length796774
length of high quality
(start - end)
435 (47 - 481)472 (73 - 544)
definitionCHROMAT_FILE: MSMg01no421_f01.b1 PHD_FILE: MSMg01no421_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:27 2005CHROMAT_FILE: MSMg01no421_f01.g1 PHD_FILE: MSMg01no421_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTAATTTGCGGCCGCTATGCGACGTCCTGTATTTCGAGGATCGGCGGA
ATTCATGAAGTTCTTTCGCAAATGGATGAAACTAGAAAGTATCATCCTGA
ATGAGTTATCCAAATCACAAAAGAACACACATGGCATGCACTCACTGATA
AGTGGATATTAGCCCAGAAGTTCAGAATATCCAAGATACAATTCACAGAC
CACATGAAGCTCAAGAGGAAGGAAGACCACAGTGTGGATACTTCAGTCCT
TCTTAGAAGGGAGCTCAAAATACCCGTGGGAGATACAGAGACAACATTTG
GAGCAGAAACTAAAGGAAAGGGCATCCAGTGACTGTCCCACCTGGGGATC
TATCCCATATACAGTTACCAAACCCAGATCCTATTTTGGATGCCAACAAG
TGCTTGCTGACAGGAGCCTGATATAGCTGTTTCATGAGAGGCTCTGCCAG
TGCCTAACAAATACAGAAGTGGATGCTCACAGCCATCCATTGGACTGAGC
ACAGGGTCCCCAATGGAGGAGCTAGAGAAATTACCCAAGGAGCTGATAGA
GTTGGCAGTCCCATAGGATGAACAACCATATAAACTAACCCGGAACCCGT
AGCTCCCCAGGGATTAATTGACCTCCCTAAGAGTACGCTTTGGAGGTAGT
AAAGGCTCCCCGTTGTACCTTGTACCTTAATGAAGGCCTCCGGGTTGAAC
ACTCTTGTATAGGTATAGGTTCCTTGTTTCTTACCTGAGGCTCTGACCCC
CCTCTCTATACCGCGTCTAGTCCATGTCCTTTCGTTCACGCCACCN
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATTGCACGCGTGGCTAGTGCCTAATT
TGTTGGACAGAGCAGCCATGGAACATTGTCTCGGGAGATGTTATAGGCTC
CACATGTCTGCACTTGGCTGTGTCATATAGACGAGGCAGGTGTCTCTCTT
TGGTTATGGGGATGTGGTAAGCCACCAACTGTTTCTTCAGCCTGGCCAAG
TGTCATAGTTGTAAAGCCTTATTCTGCTAGGTACCAAACAGTCATTGCTC
ATGGCCCTGCCTTATTACCCTGCATGTAGCTATTTAGCACCCTGAAGGTC
AGCATATTATGTCTCCCCCAGACTGCAGAAGTTGTACCCTGGGGCTTTTG
CAAGCTTCCATGCCAGCTCACAAGAAGCCAGGAAACAGGCAGAAAGACCA
GAGCCAGGGCCAGTGAATGTCCCCTGATGTGCTCTGCATGCCTCTATCTG
CCTCCCTGAAGTGGAAGTTTCTAAGTATGTCAAGTAATACAGACTTACTT
GGTGTTTTGCTGAGGCAAGATATGTGGGAACACACATGATGTTTTGTAGA
GAGTATTAATTAGGACTTTTTGCATGGTTAAGCTTGTTTTGCTTATCTAG
CTTTTCCATGTCTTATTTGGTTCTGTGGTTTTTTCTTTGTCTGTATCTTC
CCTTCCGTGTAAAGAGGATGGTCTCTAAAATTCCTTCCTGCATTTTTGTT
TTGTCTCTGGTTCTTTCATTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_f01.g1 MSMg01no421_f01.g1 CHROMAT_FILE:
MSMg01no421_f01.g1 PHD_FILE: MSMg01no421_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:27 2005
         (472 letters)



>mm_chr1_128878865_128879736
          Length = 872

 Score =  874 bits (452), Expect = 0.0
 Identities = 467/472 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattgcacgcgtggctagtgcctaatttgttggacagagcagccatggaacattgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 caattgcacgcgtggctagtgcctaatttgttggacagagcagccatggaacattgtctc 668

                                                                       
Query: 61  gggagatgttataggctccacatgtctgcacttggctgtgtcatatagacgaggcaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggagatgttataggctccacatgtctgcacttggctgtgtcatatagacgaggcaggtg 608

                                                                       
Query: 121 tctctctttggttatggggatgtggtaagccaccaactgtttcttcagcctggccaagtg 180
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctctctttggtcatgggaatgtggtaagccaccaactgtttcttcagcctggccaagtg 548

                                                                       
Query: 181 tcatagttgtaaagccttattctgctaggtaccaaacagtcattgctcatggccctgcct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcatagttgtaaagcctcattctgctaggtaccaaacagtcattgctcatggccctgcct 488

                                                                       
Query: 241 tattaccctgcatgtagctatttagcaccctgaaggtcagcatattatgtctcccccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tattaccctgcatgtagctatttagcaccctgaaggtcagcatattatgtctcccccaga 428

                                                                       
Query: 301 ctgcagaagttgtaccctggggcttttgcaagcttccatgccagctcacaagaagccagg 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 427 ctgcagaagttgtaccctggggcttttgcaagcctccatgccagctcacaagaagccagg 368

                                                                       
Query: 361 aaacaggcagaaagaccagagccagggccagtgaatgtcccctgatgtgctctgcatgcc 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaacaggcagaaagaccagagcgagggccagtgaatgtcccctgatgtgctctgcatgcc 308

                                                               
Query: 421 tctatctgcctccctgaagtggaagtttctaagtatgtcaagtaatacagac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tctatctgcctccctgaagtggaagtttctaagtatgtcaagtaatacagac 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)