Query= MSMg01no421_f09.b1 MSMg01no421_f09.b1 CHROMAT_FILE:
MSMg01no421_f09.b1 PHD_FILE: MSMg01no421_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:28 2005
(521 letters)
>mm_chr1_192120052_192120972
Length = 921
Score = 903 bits (467), Expect = 0.0
Identities = 501/517 (96%), Gaps = 8/517 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccagcagtttccgtttactgtcagcatcttcttggcatctcccggcttctttc 64
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagcagctacagtttactgtcagcatcttcttggcatctcccggcttctttc 264
Query: 65 tgctgttttccttgaggatgttccaagggacttggaaagctcagagtttgtgctcccagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgttttccttgaggatgttccaagggacttggaaagctcagagtttgtgctcccagg 324
Query: 125 gctccatccaccaacaggaagctacccctgcccccttaggtgaaagactggtggctgcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 gctccatccaccaacaggaagctacccctgcccccttaggtgaaagactggtggctgtct 384
Query: 185 caatggatactctaatttgtacacttgacctgaggaagtccacactgaagcccacccacg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatggatactctaatttgtacacttgacctgaggaagtccacactgaagcccacccacg 444
Query: 245 aagcctcagtgctagcttttcccccttcctttgtctctctctgtatttctgtgcttgtga 304
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 445 aagcctcagtgctagcttttcccccttcctttgtcactcgctgtatttctgtgcttgtga 504
Query: 305 cgtctgccttcctggtgggactgacaagctgacgtcctttctaaggaaaggtctaggtat 364
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 cgtctgccttcctggtgggactgac--------gtcctttctaaggaaaggtctaggtat 556
Query: 365 ctactcagaaagtgatgtccactcagaaagcgtacgcacacccgtcacctgtttacgtat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 557 ctactcagaaagtgatgtccactcagaaagcgtacgcacacccgtcacctgtttacgtgt 616
Query: 425 gtcaggataaagcacccacctcttggagttttttcttcctttattttttaatgtctatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtcaggataaagcacccacctcttggagttttttcttcctttattttttaatgtctatat 676
Query: 485 gtagtaaaatgaactgtttatgaataaatttatttat 521
||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctagtaaaatgaactgtttatgaataaatttatttat 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_f09.g1 MSMg01no421_f09.g1 CHROMAT_FILE:
MSMg01no421_f09.g1 PHD_FILE: MSMg01no421_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:28 2005
(247 letters)
>mm_chr1_192272219_192272865
Length = 647
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%)
Strand = Plus / Minus
Query: 1 agtttttctttctcctcctctgtcttgcagtcaaagccacatgaatgcctcattcttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agtttttctttctcctcctctgtcttgcagtcaaagccacatgaatgcctcattcttgaa 388
Query: 61 tgtagtgtaagtcccacccattgtcccaactgaatccacagcaccctgagagtcaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtagtgtaagtcccacccattgtcccaactgaatccacagcaccctgagagtcaataat 328
Query: 121 gcagaaggattgaatctacaatgctcagcaaacctcaccaagctagggacagtctaaggt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcagaaggattgaatctacaatactcagcaaacctcaccaagctagggacagtctaaggt 268
Query: 181 ctcagagggaacgactagatgagaaggaactggaaactgccctgcccactacacccttca 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacagagggaacgactagatgagaaggaactggaaactgccctgcccactacacccttca 208
Query: 241 gccaacc 247
|||||||
Sbjct: 207 gccaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
