BAC Information

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BAC

Clone NameMSMg01-421F20
Chromosome1 (Build37)
Map Location 60,281,910 - 60,282,375
singlet/doubletsinglet
Overlap geneNbeal1
Upstream geneAls2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421F20.T7 (MSMg01no421_f20.b1)MSMg01-421F20.TJ (MSMg01no421_f20.g1)
ACCAG516009AG516010
length767783
length of high quality
(start - end)		469 (48 - 516)435 (79 - 513)
definitionCHROMAT_FILE: MSMg01no421_f20.b1 PHD_FILE: MSMg01no421_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:30 2005CHROMAT_FILE: MSMg01no421_f20.g1 PHD_FILE: MSMg01no421_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGGACAGTTACAGCCAGTTAGTGGGATCTTGTCTCACAGAGG
AAAAAACCACCAAAGTTTGTTTTGTTTCAGATTTGAGCACATCACTGCCG
GCATTTTTATTGTTAATTTGTGTTTTCATTTCATTACATAGTCAAATTTT
ATCTTTTTAAAACAAATAAACTGATTTAATTATCATTATTAAATTAGAGC
ATATTAGTATGTATGTACATATACCGTACATCACAGATCAGACAGAATGA
GACACAAAGTTTTATACTTTGTCATGTATCTCTGATCCAGTGAGAGATGG
ATGTAGGCCTCTGGCCAAGGCTGTCCTCCCTCAGGGTATGCAGTTACCAC
TGGACACTCAGCCTCACTTCTCACTTAGCTCAGCCCAGGCTAGACAGAGG
GCATTCATTTGTCGCATGCCCTGGTGTAGGAACTATGCAAACATCTAAAT
CCTCCAATCTCAGAAGAGCCCCTTAAAGAAAGAGCTACTCACTGTCTACA
TGGTGATGATAGGCTTTGTCTTGATTGNAACTAGAATTACATTGTTTGTA
ATTGTCTACNAGTACTAAAATTCATGTGATTTTTTTTTTTTTTTGTAGAA
AATTTCAGCCTAGGCATGGAACACATACTTGAAACATTTTAAGCCTAGTT
TCTTGCCAACTATTTGCTCTAAAAAAAAAAAAACGGGAAATCCCTTTGTC
CTTTAAGGAAGGTCTTA

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAAATTCCTACACCTG
ATGAACACTTTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGGG
TACAAATTTACTCAAAAAAAAAAAAAATCAGTAGCCCTGCTAAAATGACA
AATGGACTAAAAAAGAAATCAGGGAAACAATACCTTTTACAATAGCCAAA
CACTATAAAATACCTTGGGGTAAATCTAACAAGCAGTGAAAGAGTTGTAT
GAGAAAAAGACGAAGAAAAAATTTAAGACACCAAAGAAAGAAATTGATCT
ACCATGCTCATGGATCAGTAAGATTAACATAGTAAAAATAGTCATCTTAT
CAAAGCCAATCTACAGATTTGATGTAAATCCTACCTAAATTCCAACACAA
TTCTGCATAGATTTTTGAAAGGATAATTTTCAGCTTCATATGGAAACACA
AAAAAAACCCAGGCTGGCTAAAATAATCCTAATAATAAAAGAACTGCTGG
AGGTATCACCATCCCCGGATTTCAAGCTGTACCACAGAGCTATAGTAAAT
AAAACATCATTTATTGGCATAAAACAGACATAGTGATCCATGGAATAAAA
CTGAAAAACCCCGAAACACAACCCTATGGAAACCTGAAAAAGAAACCCGA
AATATACCTTGGTGGGAAAAAAAACATCCTCCACAAAATAAGTTGGAGGG
AAGGTAAAAAAACCCTAACGGGGGGGCCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_f20.b1 MSMg01no421_f20.b1 CHROMAT_FILE:
MSMg01no421_f20.b1 PHD_FILE: MSMg01no421_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:30 2005
         (469 letters)



>mm_chr1_60281703_60282575
          Length = 873

 Score =  843 bits (436), Expect = 0.0
 Identities = 457/466 (98%), Gaps = 4/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctaggacagttacagccagttagtgggatcttgtctcacagaggaaaaaaccaccaaa 67
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctaggacagctagagccagttagtgggatcttgtctcacagaggaaaaaaccaccaaa 267

                                                                       
Query: 68  gtttgttttgtttcagatttgagcacatcactgccggcatttttattgttaatttgtgtt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtttgttttgtttcagatttgagcacatcactgccggcatttttattgttaatttgtgtt 327

                                                                       
Query: 128 ttcatttcattacatagtcaaattttatctttttaaaacaaataaactgatttaattatc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcatttcattacatagtcaaattttatctttttaaaacaaataaactgatttaattatc 387

                                                                       
Query: 188 attattaaattagagcatattagtatgtatgta----catataccgtacatcacagatca 243
           |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 388 attattaaattagagcatattagtatgtatgtatgtacatataccgtacatcacagatca 447

                                                                       
Query: 244 gacagaatgagacacaaagttttatactttgtcatgtatctctgatccagtgagagatgg 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 gacagaatgagacacaaagttttatactttgtcatggatctctgatccagtgagagatgg 507

                                                                       
Query: 304 atgtaggcctctggccaaggctgtcctccctcagggtatgcagttaccactggacactca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atgtaggcctctggccaaggctgtcctccctcagggtatgcagttaccactggacactca 567

                                                                       
Query: 364 gcctcacttctcacttagctcagcccaggctagacagagggcattcatttgtcgcatgcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 568 gcctcacttctcacttagctcagcccaggctagacagagggcattcagttgtcgcatgcc 627

                                                         
Query: 424 ctggtgtaggaactatgcaaacatctaaatcctccaatctcagaag 469
           ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 628 ctggtgtaggaactaggcaaacatctaaatcctccaatctcagaag 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 873
Length adjustment: 10
Effective length of query: 459
Effective length of database: 863
Effective search space:   396117
Effective search space used:   396117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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