BAC Information

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BAC

Clone NameMSMg01-421J02
Chromosome1 (Build37)
Map Location 182,044,334 - 182,044,870
singlet/doubletsinglet
Overlap geneCdc42bpa
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneCabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421J02.T7 (MSMg01no421_j02.b1)MSMg01-421J02.TJ (MSMg01no421_j02.g1)
ACCAG516163AG516164
length874769
length of high quality
(start - end)
88 (78 - 165)542 (76 - 617)
definitionCHROMAT_FILE: MSMg01no421_j02.b1 PHD_FILE: MSMg01no421_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:47 2005CHROMAT_FILE: MSMg01no421_j02.g1 PHD_FILE: MSMg01no421_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXGAGAGTTTCGAAAACGCGGAA
TTCGCTCTGTAGATTACGCTGGACCCGAACTCACAGAGATTCACCTGCCT
CTGCCTCCCAAGTACTGGGATTAAAGGTGTGCACCACCACTGCCTGTCCA
TTATTACCTTTTCCTCCCGCTCCGGCTCGGGCGCGGGGACGGGACGGAAG
GGTCGTTGTTGTCTGGAGGCGGGTGGGGGGGGGTTGGAGGCGGGCGGGGC
GTCGAGGTTTATGAGCGGTGACATGCGACGGTGTCGGGCGGGAGATGAGG
TGGGTGTCGTGGGGGACGCCCAGCGGAGTTTTTTTTTTTGTTGAGNACGG
CTACGCATGGGGCGTGGGGGGGTGTTGTTTTGTTCCGGTGGACAGGAGGG
GCTGAGCGGGCGTTTGTCGCGGTGTATAGACTTCCCACCCCTAGTTCCTT
TTTGTAGGTGGTTTGTGTGCGGCCGACTCGTTTGCCCATGTTGTCGTTAT
GCTTGGTTGCGATTGTGTTGTATTTTGTTGTGGTTGTTGTGGCCTGTCTC
CTGAGTTCGTTTTTGGTTAAGATTCTTTTTGTCGAAGCCCCTGGGTGCCT
ATTGGATGTGCTTGATTGTGCGCCGTCCTTAATTTAATTTATGTATGAAC
CATCGATAGCCAATTACGACGTGGTGTTTATCGTCGCATCGGTTATATCG
GACTCTCGTTAGCCCGTCTGTTGTTCATCCTCGCGTTATGCGTGTTCAGA
GTGGCGGCGTATACTTGTGATGTATGGTCTTCTCGTGTCAATAGAACGCT
TACTATATAACATTGATTCTTTTACCTCATCATCCCTGAGCATTCCGCCG
TGATTAACTATCCTTCTGTATCCN
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATACGTTAGCAACCACACATGTGC
ACACCCTTGAGAGTTCATACACACACGCACACACACTCATGCGTATAGAC
ACGTGCATAGACTGGCTGAGATATTAGGTATTAGTTAATATACATTATAT
TAAGAATTTTAAATTACAGAAATGACTGCTTTGCCATGAATTTGACTGTC
TTTTCAGTGTTAAAATATACTTCATGAGTAACTTTTGAGTTGGGATAAAA
GTATTTTGTGATGTATTTATAATGTTCTCACATGTCATATGAGGTAGACA
CTTCAACAGTGGTAACATTAGAACTTAGTGTAGAAACTTGAAAAGGGAGA
AGTTGATTTGGGGGCAGAGTCTTATTGAATAGCCCTTGGTGTTCTTGATT
TAAGAATCCTCTTGCCCACTTCCCCAGAGTGCTAGGATTGCATTTATTAG
CACTGTCTATGGACCTACAGTATACAAAATCTTATGGGTATAGGAAAAAC
AATCAGGGAAACAATATAAAATAATTAACTCAATATTAATTATTTTACTA
ATGAATAATTTTTGGGTGGTTGTTGTCTTTTTCCAGGTTGGCTAATGCTT
ACATTGGTTGGCCTTTTTGATTTACCCGATTTACTAGCATTTTTTTTGAG
AACTTTTGGTCTTCTTCTTACCTGGACCAAGCTCAGGGGAGGTCCTAACT
CTCATGAGATAAACTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_j02.g1 MSMg01no421_j02.g1 CHROMAT_FILE:
MSMg01no421_j02.g1 PHD_FILE: MSMg01no421_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:47 2005
         (542 letters)



>mm_chr1_182044134_182045077
          Length = 944

 Score =  940 bits (486), Expect = 0.0
 Identities = 526/544 (96%), Gaps = 9/544 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatacgttagcaaccacacatgtgcacacccttgagagttcatacacacacgcacacaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tatacgttagcaaccacacatgtgcacacccttgagagttcatacacacatgcacacaca 260

                                                                       
Query: 61  ctc--atgcgtatagacacgtgcatagactggctgagatattaggtattagttaatatac 118
           |||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaaatgcgtatatacacgtgcatagactggctgagatattaggtattagttaatatac 320

                                                                       
Query: 119 attatattaagaattttaaattacagaaatgactgctttgccatgaatttgactgtcttt 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 attatattaagaattttaaattacagaaatgactgctttgccatgaatttgactgttttt 380

                                                                       
Query: 179 tcagtgttaaaatatacttcatgagtaacttttgagttgggataaaagtattttgtgatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgttaaaatatacttcatgagtaacttttgagttgggataaaagtattttgtgatg 440

                                                                       
Query: 239 tatttataatgttctcacatgtcatatgaggtagacacttcaacagtggtaacattagaa 298
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttataatgttctcacatatcatatgaggtagacacttcaacagtggtaacattagaa 500

                                                                       
Query: 299 cttagtgtagaaacttgaaaagggagaagttgatttgggggcagagtcttattgaatagc 358
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 501 cttagtgtagaaacttgaaaagggagaagttgatttgggggcagagtctggttgaatagc 560

                                                                       
Query: 359 ccttggtgttcttgatttaagaatcctcttgcccacttccccagagtgctaggattgcat 418
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatggtgttcttgatttaagaatcctcttgcccacttccccagagtgctaggattgcat 620

                                                                       
Query: 419 ttattagcactgtctatggacctacagtatacaaaatcttatgggtataggaaaaacaat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttattagcactgtctatggacctacagtatacaaaatcttatgggtataggaaaaacaat 680

                                                                       
Query: 479 cagggaaacaatataaaataattaactcaatattaattattttactaatgaataattttt 538
           ||||||||||||||||||       ||||| ||||||||||||||||||||| |||||||
Sbjct: 681 cagggaaacaatataaaa-------ctcaagattaattattttactaatgaagaattttt 733

               
Query: 539 gggt 542
           ||||
Sbjct: 734 gggt 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 944
Length adjustment: 10
Effective length of query: 532
Effective length of database: 934
Effective search space:   496888
Effective search space used:   496888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)