Query= MSMg01no422_b14.b1 MSMg01no422_b14.b1 CHROMAT_FILE:
MSMg01no422_b14.b1 PHD_FILE: MSMg01no422_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:28 2005
(484 letters)
>mm_chr1_36952568_36953451
Length = 884
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Plus
Query: 1 gctttgtgtctttactctttaaaaaggtactttatttgtataaaagcatgcagttgagag 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gctttgtgtctttactctttaaaaaggtactttatttgtataagagcatgcagttgagag 260
Query: 61 attttaaactttaaaagaaagttttggagtttcacagaaaattattttttaaaactgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaaactttaaaagaaagttttggagtttcacagaaaattattttttaaaactgggt 320
Query: 121 atctttaagaaacaacttttagccaggcagtggtagcacacgcctttaatcccagcactc 180
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 321 atctttaagaaacaacttttagccaggcagtggtggcgcacgcctttaatcccagcactc 380
Query: 181 gggaggcagaggcaggtggatttctgaattcgaggccagcctggtctacaaagtgagttc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaggcagaggcaggcggatttctgaattcgaggccagcctggtctacaaagtgagttc 440
Query: 241 caggacagccaagtctacacagagaaaccctgtctcgaaaaaaagtgatcttaataaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggacagccaagtctacacagagaaaccctgtctcgaaaaaaagtgatcttaataaata 500
Query: 301 gatttatttttacaaaaggctacagctagacaccagaaactgaagtatttctatcttatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttatttttacaaaaggctacagctagacaccagaaactgaagtatttctatcttatg 560
Query: 361 ttacagtaagacaatgaccttaagcaggatgacaaagaactaggaacaagttctcagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacagtaagacaatgaccttaagcaggatgacaaagaactaggaacaagttctcagcct 620
Query: 421 atggtcaggatcccttgaagtcaaagaacactttccacaggggtagcctagggttgtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggtcaggatcccttgaagtcaaagaacactttccacaggggtagcctagggttgtctg 680
Query: 481 catg 484
||||
Sbjct: 681 catg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_b14.g1 MSMg01no422_b14.g1 CHROMAT_FILE:
MSMg01no422_b14.g1 PHD_FILE: MSMg01no422_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:28 2005
(545 letters)
>mm_chr1_37120148_37121094
Length = 947
Score = 946 bits (489), Expect = 0.0
Identities = 526/547 (96%), Gaps = 16/547 (2%)
Strand = Plus / Minus
Query: 1 cccattcgaggctttcagagtacacgtccattactgatgttctgagtcacagtgttcttc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 819 cccattcgaggctttcagagtacacttccattactgatgttctgagtcacagtgttcttc 760
Query: 61 ctccctggctgtgacctcattcactagaccacattcctgaatgaaaaatgaggttccctc 120
|||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 759 ctccctggctgtgacc----------g----cattcctgaatgaaaaatgaggttccctc 714
Query: 121 agcctccataaaag--tctgtttagccttgacctacacaagggcaggctctccctacaag 178
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agcctccataaaagtctctgtttagccttgacctacacaagggcaggctctccctacaag 654
Query: 179 tactgcctccatcacaagaaacacagaatgaccaagaacttcagggacacccccctcccc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tactgcctccatcacaagaaacacagaatgaccaagaacttcagggacacccccctcccc 594
Query: 239 gcctcccctctctatgtagcctccctactagcccagaaagcagggtggctctgcctagct 298
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcctcccctccctatgcagcctccctactagcccagaaagcagggtggctctgcctagct 534
Query: 299 tggacctaactaaccccaggaatagcatggctagggccacatctccagaaggttcccatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tggacctaactaaccccaggaatagcatggctagggccacatctccagaaggttcccatg 474
Query: 359 tcagtgagcacacatcccttagactgtttctgtgagcgacacatttaaagcagtttctag 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 473 tcagtgagcacacatcccttagactgtttctgtgagccacacatttaaagcagtttctag 414
Query: 419 acagatccattcactgtgaaatcccactgggtgcatggctgtgccaaggaaataatgcag 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 413 acagatccattcactgtgaaatcccactgggtgcatggttgtgccaaggaaataatgcag 354
Query: 479 aagatatgggtggtccctatttcgtcctttatttccaaactgtattgcagagcacttgaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagatatgggtggtccctatttcgtcctttatttccaaactgtattgcagagcacttgaa 294
Query: 539 atgacta 545
|||||||
Sbjct: 293 atgacta 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 947
Length adjustment: 10
Effective length of query: 535
Effective length of database: 937
Effective search space: 501295
Effective search space used: 501295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
