Query= MSMg01no422_d12.b1 MSMg01no422_d12.b1 CHROMAT_FILE:
MSMg01no422_d12.b1 PHD_FILE: MSMg01no422_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:37 2005
(662 letters)
>mm_chr1_68121230_68122291
Length = 1062
Score = 1228 bits (635), Expect = 0.0
Identities = 652/662 (98%), Gaps = 8/662 (1%)
Strand = Plus / Minus
Query: 5 ggaattccaacccg----atacccccccgatttactggagaaaggagagcgtctgcctca 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 862 ggaattccaacccgagaaat----ccccgatttactggagaaaggagagcgtctgcctca 807
Query: 61 gcctcccatctgcactattgatgtttacatggtcatggtcaaatgtaaggctgcaaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gcctcccatctgcactattgatgtttacatggtcatggtcaaatgtaaggctgcaaaatc 747
Query: 121 actctttctgcctgcattatcattcttaataaataaaagtttagattgttttacctgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 actctttctgcctgcattatcattcttaataaataaaagtttagattgttttacctgcaa 687
Query: 181 aatgtttctctgaattgttaaatagagtagcaagaatatttacgaatgcagaatataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatgtttctctgaattgttaaatagagtagcaagaatatttacgaatgcagaatataaat 627
Query: 241 acatgttgtggtaattactattatgaggtaatagtatgcctctaagttacaaagtaaaaa 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 626 acatgttgtggtaattactattatgaggtaatagtatgccactaagttacaaagtaaaaa 567
Query: 301 ttatgtcgttcttactcttacaatttttcaaatttccataccctttgaagtttgtcataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttatgtcgttcttactcttacaatttttcaaatttccataccctttgaagtttgtcataa 507
Query: 361 agagagataattattcataagaatgttagtaataatattaatgttaatctttatgggaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agagagataattattcataagaatgttagtaataatattaatgttaatctttatgggaaa 447
Query: 421 atagctaaacatcattgagagtctgaaaatgaattaaagtagatatgggtttaattaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atagctaaacatcattgagagtctgaaaatgaattaaagtagatatgggtttaattaaac 387
Query: 481 ataagttaacagagcaggttgggagtcaaaagagacgaatccacaacgaagtanagatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 386 ataagttaacagagcaggttgggagtcaaaagagacgaatccacaacgaagtaaagatta 327
Query: 541 agatgtttactctttttaatttggtcatttgcttacatcaaatgttcttacttttctttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agatgtttactctttttaatttggtcatttgcttacatcaaatgttcttacttttctttc 267
Query: 601 cacttctatactccaggcacatatgtattataaatgtgttttgaaagcctagacccctaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacttctatactccaggcacatatgtattataaatgtgttttgaaagcctagacccctaa 207
Query: 661 tt 662
||
Sbjct: 206 tt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_d12.g1 MSMg01no422_d12.g1 CHROMAT_FILE:
MSMg01no422_d12.g1 PHD_FILE: MSMg01no422_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:37 2005
(528 letters)
>mm_chr1_67950628_67951555
Length = 928
Score = 986 bits (510), Expect = 0.0
Identities = 524/529 (99%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 1 catgaaaacacaaacagttgaaggaaatgaatcaaacagttcatgacatgaaagtggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaaaacacaaacagttgaaggaaatgaatcaaacagttcatgacatgaaagtggaac 260
Query: 61 ttgaatcaataaaggaataaacatggagtcccagtcagagttgggctctgctttcccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaatcaataaaggaataaacatggagtcccagtcagagttgggctctgctttcccctt 320
Query: 121 cttgcctggcaggtggatgccctgagggaagcccagatcccagaaactcccacccacatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcctggcaggtggatgccctgagggaagcccagatcccagaaactcccacccacatt 380
Query: 181 acaactctcagtagtacaccagtggtgcctgggtagacaggagactgggagctacagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaactctcagtagtacaccagtggtgcctgggtagacaggagactgggagctacagcaa 440
Query: 241 ctgttccatactcn-cttgtttcccactccaggaaaacctggactgagaaccacaattgc 299
|||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttccagactccact-gtttcccactccaggaaaacctggactgagaaccacaattgc 499
Query: 300 ggactgcattttgcatcccctgagcatcatgttggtggcactccaggtgctctagcggga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggactgcattttgcatcccctgagcatcatgttggtggcactccaggtgctctagcggga 559
Query: 360 agcaggacacaggccagcataaaaaccctagtgaaatagagccactaattaaaaacctca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcaggacacaggccagcataaaaaccctagtgaaatagagccactaattaaaaacctca 619
Query: 420 acgggggggggggcagaaatatggttttaatggagaattttataagaatttaaaagaagg 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acgggggggggg-cagaaatatggttttaatggagaattttataagaatttaaaagaagg 678
Query: 480 gtaaatagtaaataatccttaactattcaacaaattccacagacagaac 528
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtaaatagtaaataatccttaactattcaacaaattccacagacagaac 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
