Query= MSMg01no422_j07.b1 MSMg01no422_j07.b1 CHROMAT_FILE:
MSMg01no422_j07.b1 PHD_FILE: MSMg01no422_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:03 2005
(580 letters)
>mm_chr3_58117938_58118913
Length = 976
Score = 1007 bits (521), Expect = 0.0
Identities = 565/581 (97%), Gaps = 6/581 (1%)
Strand = Plus / Plus
Query: 1 gccttgaacttgtgacatttctgcttcagcatctcaagtgctgatgaacaactttctgag 60
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttgaacctgtgacatgtctgcttcagcatctcaagtgctgatgaacaactttctgag 260
Query: 61 aacccaggctagcctcaagttcacagagatctgcctgcatttgcctttcaagtactgagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccaggctagcctcaagttcacagagatctgcctgcatttgcctttcaagtactgaga 320
Query: 121 ttaaaagtttaagccatcatacctaagtgtaaatgtctttttaattgatgtccttttaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaagtttaagccatcatacctaagtgtaaatgtctttttaattgatgtccttttaat 380
Query: 181 taaaaacatttaattaggaacattcagaatggcaataggacagctgcagggttttttttg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 taaaaacatttaattaggaacattcagaatggcaataggacagctgcagg-ttttttttg 439
Query: 241 tttgtttttttttgttgttgttt-ttttgtacaactacagagtaatattcagatggcaga 299
||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgtttgttt--gtt--tgtttgttttgtacaactacagagtaatattcagatggcaga 495
Query: 300 atgccagagatggcgtacaaactgcattggacacaactaacaagaacccatacgttagca 359
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 496 atgccagggatggcgtacaaactgcattggacacaactaacaagaacccatatgttagca 555
Query: 360 ggcaagattgacagccactgataagtcagggctgtctaaaggcatatttgatagtgataa 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggcaagattgacggccactgataagtcagggctgtctaaaggcatatttgatagtgataa 615
Query: 420 agacatctttgttgatgggctcaaatttctctgaggatcagctaaacctaccttctagtt 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 616 agacatctttgttgatgggctcaaatttctctgaggatcagctaaacctgccttctagtt 675
Query: 480 tatatgtacgttaatagcccctacctccttgttcagctatatgaaaacaccacctttctg 539
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 676 tatatgtacgttaatagcccctacctccttgttcagctatgtgaaaacaacacctttctg 735
Query: 540 ttcaactatatataataaacaggctgagtgagctttcaggg 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttcaactatatataataaacaggctgagtgagctttcaggg 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 976
Length adjustment: 10
Effective length of query: 570
Effective length of database: 966
Effective search space: 550620
Effective search space used: 550620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j07.g1 MSMg01no422_j07.g1 CHROMAT_FILE:
MSMg01no422_j07.g1 PHD_FILE: MSMg01no422_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:03 2005
(466 letters)
>mm_chr1_53489532_53490397
Length = 866
Score = 348 bits (180), Expect = e-100
Identities = 198/204 (97%)
Strand = Plus / Plus
Query: 3 caggctttttgcagctgtcaaagaattcagggtcagagatggggtccatgaggtatgatc 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 caggctttttgcagctgccaaagaattcagggtcagagatggggtccatgaggtatgatc 262
Query: 63 ggatgatattagcccgcaatcctttcggtgcttcgttggtcatttttactccattctgca 122
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 ggatgatattagcccgcaatccttttggtgcttcgttggtcatttttactccattctgca 322
Query: 123 ggaccgacacagggaaatttggagatgggtaactcgtcagccagattcggaaatcagggt 182
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggactgacacggggaaatttggagatgggtaactcgtcagccagattcggaaatcagggt 382
Query: 183 gtgttgattctgggtttaactcct 206
|||||||||||| | |||||||||
Sbjct: 383 gtgttgattctgcgcttaactcct 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
