Query= MSMg01no422_j14.b1 MSMg01no422_j14.b1 CHROMAT_FILE:
MSMg01no422_j14.b1 PHD_FILE: MSMg01no422_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:04 2005
(615 letters)
>mm_chr1_75814642_75815656
Length = 1015
Score = 1091 bits (564), Expect = 0.0
Identities = 600/612 (98%)
Strand = Plus / Plus
Query: 4 ggaattccctggattcccaaaaggtatttaaagatgctggaagagaagagagggagacac 63
|||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatggatgcagaaaaggtatttaaagatgctggaagagaagagagggagacac 263
Query: 64 attcactccagtcagcttgctcctgagttgggttgaggccacccatccatcctcattacc 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 attcactccagtcagcttgctcctgagttgggctgaggccacccatccatcctcattacc 323
Query: 124 aagctcctccccagctactgacctcttgtgaattctatctcgctcctagcttcgagggtg 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 aagttcctccccagctactgacctcttgtgaattctatctcgctcctagcttcctgggtg 383
Query: 184 cacacccatgaggggaccatgtctggctttgtggccagtgttaccctgagtggaagccct 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 cacacccatgaggggaccatgtctggctttgtggccagtgttaccctgaatggaagccct 443
Query: 244 agacactggacagcgctgaagcctgagggtgggtttctttttgatggacacaatgagaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacactggacagcgctgaagcctgagggtgggtttctttttgatggacacaatgagaga 503
Query: 304 ccttctaaggtattgcctagaagacagaggctagaatattcatgtgttaccaatgtttag 363
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 ccttctaagatattgcctagaagacagaggctagaatattcatgtattaccaatgtttac 563
Query: 364 gaagcaaatgattttgaatatctattcttaaagtctgaccagagcctgacccaatgacca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaagcaaatgattttgaatatctattcttaaagtctgaccagagcctgacccaatgacca 623
Query: 424 accttggttaaatgatagttttttcctcccaaaagaatatacaggttagacccaaagagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accttggttaaatgatagttttttcctcccaaaagaatatacaggttagacccaaagagg 683
Query: 484 acagaaaagcagagggcatgggaagcaaatgcttactgagggccaaggttgagcgctgac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagaaaagcagagggcatgggaagcaaatgcttactgagggccaaggttgagcgctgac 743
Query: 544 ttcatgtgtacatgctcattttatgagatggggaaatcacagctcagaaagtttcagcat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcatgtgtacatgctcattttatgagatggggaaatcacagctcagaaagtttcagcat 803
Query: 604 cttcaccgagat 615
||||||||||||
Sbjct: 804 cttcaccgagat 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j14.g1 MSMg01no422_j14.g1 CHROMAT_FILE:
MSMg01no422_j14.g1 PHD_FILE: MSMg01no422_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:05 2005
(547 letters)
>mm_chr1_75905034_75905980
Length = 947
Score = 627 bits (324), Expect = 0.0
Identities = 348/362 (96%), Gaps = 11/362 (3%)
Strand = Plus / Minus
Query: 1 ctatattggaaatatatgcacagcctggtttggcagcaatatatagacaccacgtgaatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 356 ctatattggaaatatatgcacagcctggtttggcagcaatatatagacaccatgtgaatg 297
Query: 61 tctcctctctgcttgcaaagggaaggtggccaacaaatggcctttttcaagaacccgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 296 tctcctctctgcttgcaaagggaaggtggccaacaaatggcctttttcaagaacctgctt 237
Query: 121 tacaaaagcaaaatccagaaacatttttgtatctgcttgtatagcttattcaccacagaa 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 236 tacaaaagcaaaatccagaaacatttttgtatctgcttgtatagtttattcaccacagaa 177
Query: 181 gggcacccctaaaaaagaaatggggggctgatatctgctctgtgttctgctcaaaagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gggcacccctaaaaaagaaatggggggctgatatctgctctgtgttctgctcaaaagcct 117
Query: 241 tacaccgt-----attttttgcataggactatcaaaaggaagggaaggttttctttttgt 295
|||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tacaccgtaacaca------gcataggactatcaaaaggaagggaaggttttctttttgt 63
Query: 296 ttgatcaagtttacccataatctctcacctcccactcctcttagacctcccccaatttca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttgatcaagtttacccataatctctcacctcccactcctcttagacctcccccaatttca 3
Query: 356 tc 357
||
Sbjct: 2 tc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
