Query= MSMg01no422_l23.b1 MSMg01no422_l23.b1 CHROMAT_FILE:
MSMg01no422_l23.b1 PHD_FILE: MSMg01no422_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:16 2005
(581 letters)
>mm_chr1_177668412_177669393
Length = 982
Score = 1033 bits (534), Expect = 0.0
Identities = 567/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Plus
Query: 5 gaattcccttccacttcacgcacccctaccctgtatccttttacttagctccctgaaacc 64
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcccttccacttcatgcacccctaccctgtagccttttacttagctccctgaaacc 264
Query: 65 cttaggtgctttctgcttcctagatagcccatgttgggaatgtgtttacgtttggaggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttaggtgctttctgcttcctagatagcccatgttgggaatgtgtttacgtttggaggct 324
Query: 125 gagataacctttctaagttatttttcacaaacttcttgattctttaagggtcagataaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagataacctttctaagttatttttcacaaacttcttgattctttaagggtcagataaca 384
Query: 185 cctaccccagagaattgttttaacctttcccagactctggaagggaagcttgg-agccct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 cctaccccagagaattgttttaacctttcccagactctggaagggaagcttggcagcccc 444
Query: 244 ttttcacatattgcccttcgtgtttgctgcacgttaattctgttttaggatatatcttta 303
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ttgtcacatattgcccttcgtgtttgctgcacattaattctgttttaggatatatcttta 504
Query: 304 taagaaagtaagataagtactatattcaacattctatttttgattattgcatattttgaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagaaagtaagataagtactatattcaacattctatttttgattattgcatattttgaa 564
Query: 364 catagatgactcccatagaagttgtagaacaagctgaatacctagtatttaacaacagat 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 catagatgactcccatagaagttgtagaacaagctgaaaacctagtatttaacaacagat 624
Query: 424 gacaaactgtgtttgacatgctgctattaattctatgaattaaagatgaaagagactaag 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacagactgtgtttgacatgctgctattaattctatgaattaaagatgaaagagactaag 684
Query: 484 tccttggtcatgtgctagtaactgataaataaagcattcccataaagggcaatgagcgtt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accttggtcatgtgctagtaactgataaataaagcattcccataaagggcaatgagcgtt 744
Query: 544 gcagtgtggatgtaacgagcagacagaatgctgaccac 581
||||||||||||||| |||||| |||||||||||||||
Sbjct: 745 gcagtgtggatgtaatgagcagtcagaatgctgaccac 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space: 555012
Effective search space used: 555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_l23.g1 MSMg01no422_l23.g1 CHROMAT_FILE:
MSMg01no422_l23.g1 PHD_FILE: MSMg01no422_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:16 2005
(430 letters)
>mm_chr1_177810575_177811407
Length = 833
Score = 717 bits (371), Expect = 0.0
Identities = 418/439 (95%), Gaps = 11/439 (2%)
Strand = Plus / Minus
Query: 1 atcgctagatacgagtg------aggacacacttcagcccgcctctgcggaaagccggag 54
|||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct: 655 atcgctaggtacgagtgttggtaaggacacacgtcagcccgcctctgcggaaagcgggag 596
Query: 55 acccggaggccgaggcagtcgcctgcaggcgctccacgctcccgctcacttcccggagat 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acccggaggccgaggcagtcgcctgcaggcgctccacgctcccgctcacttcccggagat 536
Query: 115 ccgggtttcgcgccgaggggcagaaggcacgtggatcagagtcatggggaccccactttc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccgggtttcgcgccgaggggcagaaggcacgtggatcagagtcatggggaccccactttc 476
Query: 175 ctccacacggcccgctgctccagtgaccgcccggccgcccgcataggg----gctcgctc 230
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 475 ctccacacggcccgctgctccagtgaccgcccggccgcccgcataggggctcgctcgctc 416
Query: 231 acctgggattcagatcggcggcgagcggctgctgtaaacgcagccatggacctttcgatt 290
||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 415 acctggggttcagaacggcggcgagcggctgctgcaagcgcagccatggacctttcgatt 356
Query: 291 tgcgcgggatcgggaagccccgcccagcggacatgacgtccctcggcgttctggagccgc 350
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct: 355 tgcgcgggatcgggaagccccgcccagcggacatgacgtccctgggcgtcct-gagccgc 297
Query: 351 agcctccacctcccgctttctatgacccgactttcctcttagccgagtcctgagcccatc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 296 agcctccacctcccgctttctatgacccgactttcctcttagccgagtcctgagcccttc 237
Query: 411 cttgcaaggtaggaagtcc 429
|||||||||||||||||||
Sbjct: 236 cttgcaaggtaggaagtcc 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 833
Length adjustment: 9
Effective length of query: 421
Effective length of database: 824
Effective search space: 346904
Effective search space used: 346904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
