CGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCAAAAGTATAT
CCATTCACAACTTAATACATAGTAAATAGTTTTTAGGCAAATAACTTATT
CATCTGTTTGGAATTGCTTAAGTAGTCTTTTTATATCCCAACCACCTTGG
TTAGCAAGAAAGCTTTAGTTTATGTCTAAGTATGTGAATACTGCAGTACA
CATATCTTTTCAAAGTGTGGGAAGCAGGGGAAAGCGTGAGCGTATAAAGT
CCTGAGTAAATGTGTGTTGTTGGCATGAGACAACAATAGCAAAGACAATA
GCCTCAGCCTTCTCACATGGTCAGGCTTAGAGATAAGATAGGCTTCACGT
AGCAGCTCAAATATGGGAGTTGACAGTGTATGCAGAAATTGCTCACTATA
AATGTTTTGTCAGATGTCAACAGCCTGAAGACTGCTCCATATTTTCTGTT
TTGATGGAGGTTAGTTAAGCGCTTCCACTTTCTCCAGGTGTGTGCCATAA
ATCCTTCCTCTTTTTTTTTTTTTTCTGTGCAGTGACTTCAAGGAAGCCTG
CCTCATTGCTTTTTTGCGTTTTTTTTCTTTCTTCCTTCCTTCCCTCCCTT
CTTTCCTCCCTTCTTTCCTCCTTTCCTTCTTTCCTTCTTTTCCTCCCTTC
TTTCTCTCCTTTTCCCTTCTTCTCTTCCCCCCCCCCTTATTTTCTTTCTC
TTTCCTTTTTCTCTTTTTTCGGACATTTTTCCTTATAACCTCCTTGAAAA
AATTTTTTCTTCCCCATCCCCCCTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAGAAGAAGAATGCCCTCTGACTCATCTAAATAAAGCCTCTA
TGAACTCCCAGAGATGGAGGTGGCACAAAAGGGTCCTCAGGGATCTACAT
CTTGTCATATGCAATACATATTTATTTTCAGCTTAATAATTTTCTGTGCC
TCTGGAAACTGTAAATGAGTGGGTCTCTGATTCTCGTGCCTGCATTTGGT
GTTCCTTTTTTTTTTTTTGAGGTTATATTTTCTAACTTCTATGTGATGGT
TTTTAATTTTATCTTACTCTACTTTCTTTTGTCATATTTGGTTGTTATCA
TTAGAAGCCTGTTATTTTCTAATGAGAGACATAAAGAAAGTGGCTCTGGA
GTTGAGGGGAGGTGGGGAAATGCAAAGTGTGAAGGGAGAGGAAACTGGGA
TCAAGATGCATTATAAGAGGAAAGAATATAATTTAAATAAAAGAGAAAAT
TAAAGATGAAATAAAATATAAACAAGATAAACCTCCCAGGAAGCAAAGAG
GTGAGTTTGATGTACCTTAATTCATTTTATGTAGCGATATGCGCTAATAA
ATAATTAGCAGAATTTAGAAAATAATAGGTATTTTTGGCTAATTTGACTT
CTACGGGTTTTTTTAATGGATTAATTTCCCCTAAAAAAATGGGGTAATTA
TGGGCTGGAGTCTTCTAAAATAATTTCCCCCTTAGCTTTTAATATCCCTT
CCAACACTACCTTTTGTTN

Query= MSMg01no423_d21.b1 MSMg01no423_d21.b1 CHROMAT_FILE:
MSMg01no423_d21.b1 PHD_FILE: MSMg01no423_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:52 2005
         (468 letters)



>mm_chr1_143543843_143544710
          Length = 868

 Score =  820 bits (424), Expect = 0.0
 Identities = 454/464 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaatacatagtaaatagtttttaggcaaataacttattcatctgtttggaattgctta 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaatacatagcaaatagtttttaggcaaataacttattcatctgtttggaattgctta 260

                                                                       
Query: 61  agtagtctttttatatcccaaccaccttggttagcaagaaagctttagtttatgtctaag 120
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 261 agtagtctttttatatcccaaccactttggttagcaagaaagctttagtttacgtctaag 320

                                                                       
Query: 121 tatgtgaatactgcagtacacatatcttttcaaagtgtgggaagcaggggaaagcgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tatgtgaatactgcagtacacatatcttttcaaagtgtgggaagcaggggaaagcctgag 380

                                                                       
Query: 181 cgtataaagtcctgagtaaatgtgtgttgttggcatgagacaacaatagcaaagacaata 240
            ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgtacaaagtcctgagtgaatgtgtgttgttggcatgagacaacaatagcaaggacaata 440

                                                                       
Query: 241 gcctcagccttctcacatggtcaggcttagagataagataggcttcacgtagcagctcaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gcctcagccttctcacatggtcaggcttagagataagataggcttcacgtaggagctcaa 500

                                                                       
Query: 301 atatgggagttgacagtgtatgcagaaattgctcactataaatgttttgtcagatgtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgggagttgacagtgtatgcagaaattgctcactataaatgttttgtcagatgtcaa 560

                                                                       
Query: 361 cagcctgaagactgctccatattttctgttttgatggaggttagttaagcgcttccactt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 cagcctgaagactgctccatattttctgttttgatggaggttagttaagcacttccactt 620

                                                       
Query: 421 tctccaggtgtgtgccataaatccttcctctttttttttttttt 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccaggtgtgtgccataaatccttcctctttttttttttttt 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)