BAC Information

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BAC

Clone NameMSMg01-423F23
Chromosome1 (Build37)
Map Location 107,841,387 - 107,841,901
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423F23.T7 (MSMg01no423_f23.b1)MSMg01-423F23.TJ (MSMg01no423_f23.g1)
ACCAG517544AG517545
length773671
length of high quality
(start - end)		518 (30 - 547)---
definitionCHROMAT_FILE: MSMg01no423_f23.b1 PHD_FILE: MSMg01no423_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:02 2005CHROMAT_FILE: MSMg01no423_f23.g1 PHD_FILE: MSMg01no423_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGATTTTTAT
CTCTCTTGAAACAGATGGTTATACTTTAAACTTCACAAAATATGGGTGGT
GGCGGCGAGGGTGGGGGAGGCAATCAAAAAACCTGAAAGTCCCAGTTTCT
TGTTTTCCAGGCCAAAGCCTGAAGGATGACTGTATAAATAGTTCTAAGAC
GCTCATCTATTTTTCTTCCTTCCTGAGATAATCTGCAGAGTGTCTGCCTG
GACACATCTAATGGTTTAGCCAGATGGCATTTCCAGATCATTTTTTCTAG
AAGCCCAAGATCTCATCAGATACAATGGCGTGATTTCAAGCTGGTGCAGG
AAAGCAGTATAAAAGCCATGGAATGAACCAGGGAGTGAGGAAAGATAAGT
TGCAGGAAACGTATTTAATTTTAAAAGCAACAGTTGAGGGCAAGACTAGA
AAAATTCTGTGTGTATTGAATCTGCCACAACTCTTACACAGCACTGCCCT
GAGCCTGTCTTAAACACCATCAGCGTATCTCAGTGGCTCTACATGCCACT
CAAGGGCCTAAACGCCTTTCATAGCTGGAACTGTTAACTGCACGGTTTTC
CTAGCTGAACTCCAATCGAATGGCAAGCAGCTGTGGCTCAGGCACGTGCA
GGTGCAGTGTTATTGCCAAAAGACCCTGGAAGGTTTCCGTGGAGGGGCTT
CTTTTTCTAAACTCTCCAAGGCCGAATTTAGGGGTCCCCGGAGCTGTCCT
TTTATTTTTCAAATAATTTGTTG

NCCCTGGGAGCTTNNNCCGCATGAAGCGTGTAGGCCCGGNGGNCGNCNGG
GCGTCCCCCACCAGCNNGANACNANAGAAGGATTCCAAAAACACGGGGAA
CNCNNGAGAGGGNANACAAANNCAAGAGCCCCAAGAGGGGGGCNCGCGGC
GGCNGGNGGNNGCNAGNNNGGAGAAAANCCGGACGACCAAGACCCAAAAG
NACCCCAAGNAACNNCGAGGCCCNAANCAGCAGGAAGGAGNCCGAAAAAG
ACACCCCCCTTTCCNTCCAAAGCCTCCTTCGCCCCCACCAAAAGGTGGGG
GGTTGGGAAAGGAAAAAGGGTGGAAGAAGGTTTTNANTANNNCNTNNNTT
TTCCCTTTTTTNTTTTCNCCCCCCGCCCCTTCCCCTCCCCCCCGCTCCGT
TTCTCCCCCCCCCCCCCCCCCCCCGGGGGGGGCGCGGTTCCCTCCCCCCT
TTCCCCACCCCCCCCCATCCCCCCTGTCCCTGCCTCCTCCCCCATCCGTC
AAAGCCCCCCCTCCTTCTTTTCCACCACCTCGTTCCCACGCCCTGCCCCC
CCCCTCCCCCCCACCTCTCCTCATTTCCCCGCCCTCTGCCACCCGTTGCG
TTTAATCTCCCTACCCCCCTTTAACTACCGCCATATACACGTTTTTCCAC
AACACACACACTTTAACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_f23.b1 MSMg01no423_f23.b1 CHROMAT_FILE:
MSMg01no423_f23.b1 PHD_FILE: MSMg01no423_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:02 2005
         (518 letters)



>mm_chr1_107841183_107842101
          Length = 919

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%), Gaps = 1/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagatttttatctctcttgaaacagatggttatactttaaacttcacaaaatat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattcaagatttttatatctcttgaaacagatggttatactttaaacttcacaaaatat 660

                                                                       
Query: 65  gggtggtggcggcgagggtgggggaggcaatcaaaaaacctgaaagtcccagtttcttgt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gggtggtggcggcgggggtgggggaggcaatcaaaaaacctgaaagtcccagtttcttgt 600

                                                                       
Query: 125 tttccaggccaaagcctgaaggatgactgtataaatagttctaagacgctcatctatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttccaggccaaagcctgaaggatgactgtataaatagttctaagacgctcatctatttt 540

                                                                       
Query: 185 tcttccttcct-gagataatctgcagagtgtctgcctggacacatctaatggtttagcca 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcttccttcctggagataatctgcagagtgtctgcctggacacatctaatggtttagcca 480

                                                                       
Query: 244 gatggcatttccagatcattttttctagaagcccaagatctcatcagatacaatggcgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatggcatttccagatcattttttctagaagcccaagatctcatcagatacaatggcgtg 420

                                                                       
Query: 304 atttcaagctggtgcaggaaagcagtataaaagccatggaatgaaccagggagtgaggaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atttcaagctggtgcaggaaagcagtataaaagccatggaatgaaccagggagtgaggaa 360

                                                                       
Query: 364 agataagttgcaggaaacgtatttaattttaaaagcaacagttgagggcaagactagaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agataagttgcaggaaacgtatttaattttaaaagcaacagttgagggcaagactagaaa 300

                                                                       
Query: 424 aattctgtgtgtattgaatctgccacaactcttacacagcactgccctgagcctgtctta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aattctgtgtgtattgaatctgccacaactcttacacagcactgccctgagcctgtctta 240

                                              
Query: 484 aacaccatcagcgtatctcagtggctctacatgcc 518
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 aacaccatcagcgtatctcagtggctctacatgcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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