XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATTT
GCCGGACTTTCTAGGAAGTTCCAAAGATACAAGATGAGGGAGGCTCTTAA
GAATCAATGTAGGTGACCTTTGTTGAATTGCCAAACAGTGCAGAGATGAA
ACCTGAAGAGTCCATCTTCAGTAGACAGATAGGACCCACAGGGGAGGGAT
GGGACCACCAACACAACTTTGAAATTTTTACTCAAAACTTGTCCTGTCCG
AAAGAAATTTAAGGACAGAGAAGGAGCAGAGACTGAAGGAATGGCCAACC
AATCACCAGTCCGTTTCTGAGACCCATTCCATGGGTAGATAACAATCCCT
CACATTATTAATGATGCTGAGTTTTGATTGCACACAGTATCCAAACATAA
CAGCCCTCTGAGAGGCACTACCCAAGCAGCTGACTGAAACAAATGCAGAT
ACCTAGATAAGCATTGGATGGAGGATGTGGACCCCTGTGGAAGAGTTAAG
GGAAGTATTGAAAGACCTCAAGGTAACGACAATCCTACAGGAAAACCAAC
AGTGTACAGTAACCTTGGCTTCTGGGCACTCCCTGAGTCTGAGCCACCAA
CCATAAAGCATATCTGGGCTGGGCCAGGGCCCCAGAACATATGTGGCATA
AGGCTATCAAGTCTGACCTCAGTTGGAGAGGCTGCAAAAAAATCTTGTAG
AGAATTATGTCCCAGTGTATGGAAATACTGTGGGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAACACCTGA
AAAAATGTTCAACATTCTTAATCATCAGGGAATTGTAAATAAACTTTTTA
AATAAGCAGGTCTTATATAAATTTTCAATTTTAATTTACTCCAATTTTCT
CAATTTTTTCTTCTTATTAGTTCATTAATATCCAGATGATTTAGATTTAA
TAATTTTCCTAATATATTTGAAGGAATAAACTATTTTAATTAGTTTTTCT
CATTTTTTTAACTTCCAATTATCTTCTAAATAACTTATAGTAAAACTGGA
TGTGTTTTTTATCCTAAAAGAAAATATGTTCTTTGAATAAAAGTCAATCC
AATATACATTACACACAGATAGATATGGAGAATGATATTCTTTTTCCAGA
CCTCTGTGGAAAATCTGTGAGACCCCAGGAAAGGCCAGTTTTTAATCTCT
GCATATTTGGATCATTTATGGCACAGAAAAAATAAGTTGAGAACCACTGA
TACAACCATAGTCCAAGATTTACTTACATTACATAAAAAGTTTTGTTCTG
AGTAATGAGAAGATCTGAGGAAAAAAAGAAATGGCTGACTCAGCCTGGGA
ATTACTTTGATGGAGAGAAATTTAATGATTCCCAAAGAGTACAAATGCAG
GCTCTGGAGAAATGGGTCAGTAGTTAAGAACACTTG

Query= MSMg01no423_h11.g1 MSMg01no423_h11.g1 CHROMAT_FILE:
MSMg01no423_h11.g1 PHD_FILE: MSMg01no423_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:09 2005
         (569 letters)



>mm_chr1_116567779_116568749
          Length = 971

 Score =  969 bits (501), Expect = 0.0
 Identities = 554/573 (96%), Gaps = 6/573 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaataccgaatggctgagaaacacctgaaaaaatgttcaacattcttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaataccgaatggctgagaaacacctgaaaaaatgttcaacattcttaatc 260

                                                                       
Query: 61  atcagggaattgtaaataaactttttaaataagcaggtcttatataaattttcaatttta 120
           ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 261 atcagggaactgtaaataaactttttaaataagcaggtcttaaatacattttcaatttta 320

                                                                       
Query: 121 atttactccaattttctcaattttttcttcttattagttcattaatat---ccagatgat 177
           ||||||||||||||||||| ||||||||||| |||||||||| |||||   |||||||||
Sbjct: 321 atttactccaattttctcatttttttcttctaattagttcatgaatattatccagatgat 380

                                                                       
Query: 178 ttagatttaataattttcctaatatatttgaaggaataaactattttaattagtttttct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagatttaataattttcctaatatatttgaaggaataaactattttaattagtttttct 440

                                                                       
Query: 238 catttttttaacttccaattatcttctaaataacttatagtaaaactggatgtgtttttt 297
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttttt-aacttccaattatcttctaaataacttatagtaaaactggatgtgtttttt 499

                                                                       
Query: 298 atcctaaaagaaaatatgttctttgaataaaagtcaatccaatatacattacacacagat 357
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 attctaaaagaaaatatgttctttgaataaaagtcaatccaatatactttacacacagat 559

                                                                       
Query: 358 agatatggagaatgatattctttttccagacctctgtggaaaatctgtgagaccccagga 417
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agatatggataatgatattctctttccagacctctgtggaaaatctgtgagaccccagga 619

                                                                       
Query: 418 aaggccagtttttaatctctgcatattt-ggatcatttatggcacagaaaaaataagttg 476
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 620 aaggccagtttttaatctctgcatattttggatcatttatggcacagaaaaaataatttg 679

                                                                       
Query: 477 agaaccactgatacaaccatagtccaagatttacttacattacataaaaagttttgttct 536
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 agaaccactgatacaaccatagtccaagatttacttacattgcataaaaagttttgttct 739

                                            
Query: 537 gagtaatgagaagatctgaggaaaaaaagaaat 569
           ||| |||||||||||||||| ||||||||||||
Sbjct: 740 gaggaatgagaagatctgag-aaaaaaagaaat 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 971
Length adjustment: 10
Effective length of query: 559
Effective length of database: 961
Effective search space:   537199
Effective search space used:   537199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)