Query= MSMg01no424_b14.b1 MSMg01no424_b14.b1 CHROMAT_FILE:
MSMg01no424_b14.b1 PHD_FILE: MSMg01no424_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:57 2005
(615 letters)
>mm_chr1_51753221_51754235
Length = 1015
Score = 721 bits (373), Expect = 0.0
Identities = 411/429 (95%), Gaps = 12/429 (2%)
Strand = Plus / Minus
Query: 5 gaattctcattttatctctttacggctgttaaacacaaagaacaaagtggccagcaataa 64
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattctcacttgat-tctttacggctgttaaacacaaagaacaaagtggccagcaataa 361
Query: 65 ttgtgtcacatttaaccttgagctttgcagaggcctgagattgcctgagagtctgagctt 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 ttgtgtcacatttaaccttgagctttgcagaggcctg-gattgcctgagagtctgagctt 302
Query: 125 tggacctgaggatgtggcttggtagagtcctggccta--acacacgaacaccaccactgc 182
|||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||
Sbjct: 301 tggacctgagaatgtggcttggtatagtcctgacctaacacacacaaacaccaccactgc 242
Query: 183 ataaatcagggcgtggtgatgctctctatggaggtggaaggattctcagccacacagtga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataaatcagggcgtggtgatgctctctatggaggtggaaggattctcagccacacagtga 182
Query: 243 gttaaggccagtgtgagatacatgagactatctcaaaacacacaaaaatctgggctttgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttaaggccagtgtgagatacatgagactatctcaaaacacacaaaaatctgggctttgg 122
Query: 303 aactgaatggaagtagattaaaacctttgctttagtacatcagggcaacactgggtcctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactgaatggaagtagattaaaacctttgctttagtacatcagggcaacactgggtcctt 62
Query: 363 gtgtctcagtttttttgtttgtttgtttgtttttttgttttttctgtatggttaagttga 422
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 gtgtctcagtttttttgtttgtttg--------tttgttttttctgtatggttaagttga 10
Query: 423 aatgacatt 431
|||||||||
Sbjct: 9 aatgacatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_b14.g1 MSMg01no424_b14.g1 CHROMAT_FILE:
MSMg01no424_b14.g1 PHD_FILE: MSMg01no424_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:57 2005
(553 letters)
>mm_chr1_51600204_51601156
Length = 953
Score = 961 bits (497), Expect = 0.0
Identities = 542/567 (95%), Gaps = 18/567 (3%)
Strand = Plus / Plus
Query: 1 tttctttctttcttctttttctttttttctcatagaaactctttttagtcatagcttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctttctttcttctttttctttttttctcatagaaactctttttagtcatagcttctg 260
Query: 61 tttaggatttgtggtttggtttaaatatagtactttgttagttctcatagaattttatac 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tttaggatttgtggtttggtttaaatatagtactttgttagttctcacagaattttatac 320
Query: 121 atgtaaacaatggattttcattgtgttcttccctccacagtcctcccactaactcctcca 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaaacaatgcattttcattgtgttcttccctccacagtcctcccactaactcctcca 380
Query: 181 gctactccctcactccaactttgagactccttatttatttaattgttttatgacccacca 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gctactccctcactccaactttgagactccttatttatttatttgttttatgacccacca 440
Query: 241 agtc---tttttttgtgctggccatagtgttgggtgtggatcagtcactagagtgtggtt 297
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtccaattt----gtggtggccatagtgttgggtgtggatcagtcactagagtgtggtt 496
Query: 298 agcctactagggaccagatccttaaagaaattctgtgttccccagaagcca--------- 348
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agcctaccagggaccagatccttaaagaaattctgtgttccccagaagccatcagttgtc 556
Query: 349 --caggctcctcaggtgcagatgaaggctcctgtgccccaccctcctccacactagactg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cacaggctcctcaggtgcagatgaaggctcctgtgccccaccctcctccacactagactg 616
Query: 407 ttgattgttctgatcttgagcaggtcttgtgaaaacagtaactattgtgagttcatgaat 466
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttgattgtcctgatcttgagcaggtcttgtgaaaacagtaactattgtgagttcatgaat 676
Query: 467 ataatgtgtcctttgtgttagaagaccctgacccctggccctacaacttttatacttcct 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 677 ataatgtgtcctttgtgttagaagaccctgacccctggccctacaacttttatactccct 736
Query: 527 gtccctcttccataatagttcctgagt 553
|||||||||||||||||||||||||||
Sbjct: 737 gtccctcttccataatagttcctgagt 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
