BAC Information

Click to search

BAC

Clone NameMSMg01-424B16
Chromosome1 (Build37)
Map Location 19,356,740 - 19,357,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B16.T7 (MSMg01no424_b16.b1)MSMg01-424B16.TJ (MSMg01no424_b16.g1)
ACCAG518103AG518104
length746730
length of high quality
(start - end)
560 (45 - 604)325 (330 - 654)
definitionCHROMAT_FILE: MSMg01no424_b16.b1 PHD_FILE: MSMg01no424_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:58 2005CHROMAT_FILE: MSMg01no424_b16.g1 PHD_FILE: MSMg01no424_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTACCTCTGTACCCATTTTTTCAATAGGGTTATTTAATTTT
CTGGAGTCCATATTCTTGAGTTCTTTTTATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTCTCTTATCGAAAGTGCCTTTTGCCTTATAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGATTTTTTCCCCCTATGCCCACATCTTTAATGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTTTGGTTTTATGTGGAGTTCCTTGATC
CACATAGACTTGACCTTAGTACAAGGAGATAAGAATGGATCAATTGTTAA
AAATGCTGTCTTCCCCCCCACCCACTGGATGGTTTTATCTCCCTTGTCAA
AGATCCAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTA
TTCCATTGATCTACCTGTCTGTCTCTGTACCAGTACCATGCAGNTTTGTT
TTGTTTTGTTTTGTTTTGCTTTGTTTTGTTTTGTTTTATCACAATTGCTC
TGTATTACAGCTTGGCATCAGGCATGGTGATTCCACCAGAGGTTCTTTCA
TTGTTGAGAAGAGTTTTTGCTATCCTGGGTTTTTTGCTATTTATTN
NTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTAATCCACCCAGTGAGA
AAGAGCAAAGCGTCAGGTCCACATCACTGTCATAAGAGCATGAGCTGCCT
CTTGCAGGCTGGTGTTCATCACCTGAGCTCCATCTATCTCTACACACCTA
TAGCAAAGAGCAAGCAAACCTTGCATATATGACTTCAACCCAGTTAAGTC
ATGCTCAGGTAAAGAATTAGCATTCACTAGAGTAATGAGCTTTAAGGGAT
TTTTTTTTTACAGAGTTATATTTATGTTTATGTATATATTTATACACACA
CATAGATACATACATACAAACAAATTCTTGTCTGGGGCACTACTTCTAGA
ATTGTATGTATGAATACATCCTTTGAGATGGTACAATTGTCTATAAAGAC
AGTTTTATAAATATGTACTTTTTCTTATCTTCCCAAAAAGGCAATAAAAT
TCTCTCCTTATCACTTTTCCAAGAAATTATTTTTTAAAAAAAATAAAAAA
GAGGGGTTATAGAGATTACTCTGTTGGGAAAGTACATGTTCTAGAGGCAC
AAGAACCTAAATTTGAACCTCATGTAAAAAGACCGGCTATGTTTGGTTTT
CAGCTGCACATACTTCCTATTTCTTGTGAAAATGCTTAACAGATCCATTC
TTTATTAAAGAAACTAAACTGTATCAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b16.g1 MSMg01no424_b16.g1 CHROMAT_FILE:
MSMg01no424_b16.g1 PHD_FILE: MSMg01no424_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:58 2005
         (325 letters)



>mm_chr1_19356627_19357351
          Length = 725

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtatatatttatacacacacatagatacatacatacaaacaaattcttgtctggggca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 atgtatatatttatacacacacatagatacatacatacaaacaaattcttgtttggggca 378

                                                                       
Query: 61  ctacttctagaattgtatgtatgaatacatcctttgagatggtacaattgtctataaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctacttctagaattgtatgtatgaatacatcctttgagatggtacaattgtctataaaga 318

                                                                       
Query: 121 cagttttataaatatgtactttttcttatcttcccaaaaaggcaataaaattctctcctt 180
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 317 cagttttataaatatgtacttttttttatctttccaaaaaggcaataaaattctctcctt 258

                                                                       
Query: 181 atcacttttccaagaaattattttttaaaaaaaataaaaaagaggggttatagagattac 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 257 atcacttttccaagaaattattttttaaaaaaaataaaaaagagtggttatagagattac 198

                                                                       
Query: 241 tctgttgggaaagtacatgttctagaggcacaagaacctaaatttgaacctcatgtaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tctgttgggaaagtacatgttctagaggcacaagaacctaaatttgaacctcatgtaaaa 138

                                   
Query: 301 agaccggctatgtttggttttcag 324
           ||||||||||||||||||||||||
Sbjct: 137 agaccggctatgtttggttttcag 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)