Query= MSMg01no424_i18.b1 MSMg01no424_i18.b1 CHROMAT_FILE:
MSMg01no424_i18.b1 PHD_FILE: MSMg01no424_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:32 2005
(562 letters)
>mm_chr1_67377043_67378006
Length = 964
Score = 1073 bits (555), Expect = 0.0
Identities = 561/564 (99%), Gaps = 2/564 (0%)
Strand = Plus / Minus
Query: 1 ggctaggacctcccctcacaagtgtttgagaggtagaggagcgtgaggaggacgttgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggctaggacctcccctcacaagtgtttgagaggtagaggagcgtgaggaggacgttgctg 705
Query: 61 taaatctgatgcaagccttggttttgtcatggttctggagtcagcatggttcacagagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 taaatctgatgcaagccttggttttgtcatggttctggagtcagcatggttcacagagct 645
Query: 121 ctccatacaataggtgtgtcttatccttaggtcatgcatactccagatgaaaatacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctccatacaataggtgtgtcttatccttaggtcatgcatactccagatgaaaatacagta 585
Query: 181 aaacacaagaggttctgcaccatgtgttggggacaataaggagagcatttgtagactcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaacacaagaggttctgcaccatgtgttggggacaataaggagagcatttgtagactcaa 525
Query: 241 gttcagtggcctggggtaggctggaatagactaggtgtcaacaatggaggcctctgaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gttcagtggcctggggtaggctggaatagactaggtgtcaacaatggaggcctctgaaat 465
Query: 301 tctggcttcattggaaaatgaatttcttgtgtccagagacatgtctccaaactgcctgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctggcttcattggaaaatgaatttcttgtgtccagagacatgtctccaaactgcctgaa 405
Query: 361 gttggttgctttgatggaggacactcccttacacaatcttcatattgctgcctcatatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gttggttgctttgatggaggacactcccttacacaatcttcatattgctgcctcatatta 345
Query: 421 caacctcaaggttgtatctccatcttatcaaatacccagttcacctgactcccatccctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caacctcaaggttgtatctccatcttatcaaatacccagttcacctgactcccatccctc 285
Query: 481 cactggtcacaggacccacagatgctaaaggagcctcgttttgtctgttttttttt--gg 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 284 cactggtcacaggacccacagatgctaaaggagcctcgttttgtctgtttttttttgggg 225
Query: 539 ggggggggnccttttgtttgtttt 562
|||||||| |||||||||||||||
Sbjct: 224 ggggggggtccttttgtttgtttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space: 526608
Effective search space used: 526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_i18.g1 MSMg01no424_i18.g1 CHROMAT_FILE:
MSMg01no424_i18.g1 PHD_FILE: MSMg01no424_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:32 2005
(594 letters)
>mm_chr1_67237580_67238573
Length = 994
Score = 1133 bits (586), Expect = 0.0
Identities = 592/594 (99%)
Strand = Plus / Plus
Query: 1 ccttggccccaaaaggttgcagcccacatgttgagaaccacctatttagatacgatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttggccccaaaaggttgcagcccacatgttgagaaccacctatttagatacgatttat 260
Query: 61 ttattctgaactctgaggaagtttaaccttatctgactcacaggccctatgctaataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattctgaactctgaggaagtttaaccttatctgactcacaggccctatgctaataaat 320
Query: 121 catgcttttaagctatctcttcttcttattgtaatggggtacaaaatgaaggtttgtatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcttttaagctatctcttcttcttattgtaatggggtacaaaatgaaggtttgtatc 380
Query: 181 agaacaggttgggatacagtcaatttccttccgtgtacgatgacatgtcagccaactttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacaggttgggatacagtcaatttccttccgtgtacgatgacatgtcagccaactttg 440
Query: 241 ctttgttcagaagtgtgagacagagatagcttgctctctgctttgggggttggtctactt 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgcacagaagtgtgagacagagatagcttgctctctgctttgggggttggtctactt 500
Query: 301 ccaatcaggcagctggaagggatctaacctaactttgtttttgtaattgtcacagtgggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaatcaggcagctggaagggatctaacctaactttgtttttgtaattgtcacagtgggt 560
Query: 361 cagaattagcccccatttctcaccgaagatgactgaaaattgctttatagtgtttcacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaattagcccccatttctcaccgaagatgactgaaaattgctttatagtgtttcacgt 620
Query: 421 ctaaaagcagaaattaatagcagagaagaatcctgtaaaaatccttcatggacttcacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaaagcagaaattaatagcagagaagaatcctgtaaaaatccttcatggacttcacac 680
Query: 481 aatcccagctgtctagtatttgctttcatttacagtatgaacactgatttaatagttagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatcccagctgtctagtatttgctttcatttacagtatgaacactgatttaatagttagc 740
Query: 541 ccggtgcagtgagctctaattctcaagacatgccaaaacatcatgtctgttgtt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccggtgcagtgagctctaattctcaagacatgccaaaacatcatgtctgttgtt 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
