MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-424J09
Chromosome	1 (Build37)
Map Location	107,803,637 - 107,803,879
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Cdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream gene	EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cdh20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23836 MGI:1346069
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf152 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320311 MGI:2443787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041985 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 mRNAs, 716 ESTs, 11 Proteins

name	Pign (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27392 MGI:1351629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666249 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666249
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	2310035C23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227446 MGI:1922832
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042023 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 21 ESTs, 1 Protein

name	Tnfrsf11a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21934 MGI:1314891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG635504 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:635504 MGI:3646078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs

name	Zcchc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227449 MGI:2444114
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 74 ESTs, 3 Proteins

name	EG435634 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435634 MGI:3648813
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Phlpp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98432 MGI:2138327
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 115 ESTs, 8 Proteins

name	LOC626075 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 ESTs, 9 Proteins pseudo : _no_value

name	Bcl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12043 MGI:88138
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042085 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042085
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs

name	Fvt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70750 MGI:1918000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vps4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20479 MGI:1100499
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Serpinb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20724 MGI:109579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671141 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671141
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 30 Proteins pseudo : _no_value

name	Cdh20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374412 GeneID:23836 MGI:1346069
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 20 transcript_id : NM_011800.3

name	Rnf152 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802792 GeneID:320311 MGI:2443787
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 152 transcript_id : NM_178779.3

name	LOC100041985 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234243 GeneID:100041985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 mRNAs, 716 ESTs, 11 Proteins product : similar to Capping protein (actin filament) muscle Z-line, alpha 1 transcript_id : XM_001477985.1

name	Pign (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305382 GeneID:27392 MGI:1351629
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class N transcript_id : NM_013784.1

name	2310035C23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368864 GeneID:227446 MGI:1922832
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310035C23 gene transcript_id : NM_173187.2

name	LOC100042023 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234245 GeneID:100042023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 21 ESTs, 1 Protein product : similar to PNAS-106 transcript_id : XM_001478111.1

name	Tnfrsf11a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110350008 GeneID:21934 MGI:1314891
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor receptor superfamily, member 11a transcript_id : NM_009399.3

name	EG635504 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363848 GeneID:635504 MGI:3646078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs product : predicted gene, EG635504 transcript_id : XM_983271.1

name	Zcchc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234247 GeneID:227449 MGI:2444114
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 74 ESTs, 3 Proteins product : zinc finger, CCHC domain containing 2 transcript_id : XM_001478125.1

name	Phlpp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363843 GeneID:98432 MGI:2138327
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 115 ESTs, 8 Proteins product : PH domain and leucine rich repeat protein phosphatase, transcript variant 1 transcript_id : XM_129968.4

name	Bcl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892546 GeneID:12043 MGI:88138
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell leukemia/lymphoma 2 transcript_id : NM_009741.3

name	Bcl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893253 GeneID:12043 MGI:88138
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell leukemia/lymphoma 2 transcript_id : NM_177410.2

name	LOC100042085 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234250 GeneID:100042085
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs product : hypothetical protein LOC100042085 transcript_id : XM_001478164.1

name	Fvt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625779 GeneID:70750 MGI:1918000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : follicular lymphoma variant translocation 1 transcript_id : NM_027534.1

name	Vps4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677980 GeneID:20479 MGI:1100499
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vacuolar protein sorting 4b (yeast) transcript_id : NM_009190.1

name	Serpinb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130477 GeneID:20724 MGI:109579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine (or cysteine) peptidase inhibitor, clade B, member 5 transcript_id : NM_009257.3

name	Cdh20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7549750 CCDS:CCDS15203.1 GeneID:23836 MGI:1346069
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : cadherin 7 product : cadherin 20 protein_id : NP_035930.1

name	Rnf152 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520249 CCDS:CCDS15204.1 GeneID:320311 MGI:2443787
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger protein 152 protein_id : NP_848894.1

name	LOC100041985 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234244 GeneID:100041985
definition	codon_start : 1 product : similar to Capping protein (actin filament) muscle Z-line, alpha 1 protein_id : XP_001478035.1

name	Pign (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305383 CCDS:CCDS15205.1 GeneID:27392 MGI:1351629
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IEA]; GO:0009117 - nucleotide metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : phosphatidylinositol glycan, class N product : phosphatidylinositol glycan anchor biosynthesis, class N protein_id : NP_038812.1

name	2310035C23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819659 CCDS:CCDS15206.1 GeneID:227446 MGI:1922832
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC227446 protein_id : NP_775279.1

name	LOC100042023 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234246 GeneID:100042023
definition	codon_start : 1 product : similar to PNAS-106 protein_id : XP_001478161.1

name	Tnfrsf11a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110350009 CCDS:CCDS15207.1 GeneID:21934 MGI:1314891
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IMP]; GO:0048535 - lymph node development [Evidence IMP]; GO:0001503 - ossification [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy note : receptor activator of NF-kappaB product : tumor necrosis factor receptor superfamily, member 11a protein_id : NP_033425.3

name	EG635504 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363849 GeneID:635504 MGI:3646078
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988365.1

name	Zcchc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234248 GeneID:227449 MGI:2444114
definition	codon_start : 1 product : zinc finger, CCHC domain containing 2 protein_id : XP_001478175.1

name	Phlpp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82882260 GeneID:98432 MGI:2138327
definition	codon_start : 1 product : PH domain and leucine rich repeat protein phosphatase isoform 1 protein_id : XP_129968.3

name	Bcl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133892547 CCDS:CCDS15209.1 GeneID:12043 MGI:88138
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0006916 - anti-apoptosis [Evidence IGI] [Evidence IDA]; GO:0006915 - apoptosis [Evidence IDA]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0042981 - regulation of apoptosis [Evidence IEA]; GO:0001836 - release of cytochrome c from mitochondria [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : B-cell leukemia/lymphoma 2 isoform 1 protein_id : NP_033871.2

name	Bcl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133893254 GeneID:12043 MGI:88138
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0006916 - anti-apoptosis [Evidence IGI] [Evidence IDA]; GO:0006915 - apoptosis [Evidence IDA]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0042981 - regulation of apoptosis [Evidence IEA]; GO:0001836 - release of cytochrome c from mitochondria [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : B-cell leukemia/lymphoma 2 isoform 2 protein_id : NP_803129.2

name	LOC100042085 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234251 GeneID:100042085
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478214.1

name	Fvt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625780 CCDS:CCDS15210.1 GeneID:70750 MGI:1918000
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0047560 - 3-dehydrosphinganine reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : 3-ketodihydrosphingosine reductase product : follicular lymphoma variant translocation 1 protein_id : NP_081810.1

name	Vps4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677981 CCDS:CCDS15211.1 GeneID:20479 MGI:1100499
definition	GO_component : GO:0005768 - endosome [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005773 - vacuole [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence ISS]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0016197 - endosome transport [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : suppressor of K+ transport defect 1 product : vacuolar protein sorting 4b protein_id : NP_033216.1

name	Serpinb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678103 GeneID:20724 MGI:109579
definition	GO_function : GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 note : serine protease inhibitor 7; serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5 product : serine (or cysteine) proteinase inhibitor, clade B, member 5 protein_id : NP_033283.1

name	LOC666249 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666249
definition	number : 1 pseudo : _no_value

name	LOC666249 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666249
definition	number : 2 pseudo : _no_value

name	EG435634 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435634
definition	number : 1 pseudo : _no_value

name	EG435634 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435634
definition	number : 2 pseudo : _no_value

name	LOC671141 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671141
definition	number : 2 pseudo : _no_value

name	LOC671141 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671141
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:128470
definition	standard_name : D1Mit135

name	(CDS detail)
type	STS
link
xref	UniSTS:128662
definition	standard_name : D1Mit307

name	(CDS detail)
type	STS
link
xref	UniSTS:122676
definition	standard_name : 01.MMHAP88FRA7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:47714
definition	standard_name : D7S1910

name	(CDS detail)
type	STS
link
xref	UniSTS:124519
definition	standard_name : 43.MMHAP9FLG4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:234184
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:25822
definition	standard_name : WI-21772

name	(CDS detail)
type	STS
link
xref	UniSTS:162835
definition	standard_name : RH126123

name	(CDS detail)
type	STS
link
xref	UniSTS:158793
definition	standard_name : AA793007

name	(CDS detail)
type	STS
link
xref	UniSTS:180747
definition	standard_name : AW536850

name	(CDS detail)
type	STS
link
xref	UniSTS:158840
definition	standard_name : AF019046

name	(CDS detail)
type	STS
link
xref	UniSTS:122970
definition	standard_name : 09.MMHAP29FLC3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:234185
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234188
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:178450
definition	standard_name : AW212015

name	(CDS detail)
type	STS
link
xref	UniSTS:125453
definition	standard_name : MHAa97b3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:123295
definition	standard_name : 16.MMHAP16FRF7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:178449
definition	standard_name : AI836256

name	(CDS detail)
type	STS
link
xref	UniSTS:124598
definition	standard_name : 45.MMHAP93FRG12.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:234186
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128885
definition	standard_name : D1Mit515

name	(CDS detail)
type	STS
link
xref	UniSTS:141164
definition	standard_name : Bcl2

name	(CDS detail)
type	STS
link
xref	UniSTS:128502
definition	standard_name : D1Mit163

name	(CDS detail)
type	STS
link
xref	UniSTS:141163
definition	standard_name : Bcl2

name	(CDS detail)
type	STS
link
xref	UniSTS:265515
definition	standard_name : Bcl2

name	(CDS detail)
type	STS
link
xref	UniSTS:271602
definition	standard_name : PMC16825P1

name	(CDS detail)
type	STS
link
xref	UniSTS:270102
definition	standard_name : PMC104155P1

name	(CDS detail)
type	STS
link
xref	UniSTS:270490
definition	standard_name : PMC125347P1

name	(CDS detail)
type	STS
link
xref	UniSTS:461954
definition	standard_name : Bcl2

name	(CDS detail)
type	STS
link
xref	UniSTS:271073
definition	standard_name : PMC150726P1

name	(CDS detail)
type	STS
link
xref	UniSTS:272988
definition	standard_name : PMC316415P3

name	(CDS detail)
type	STS
link
xref	UniSTS:185449
definition	standard_name : AW986256

name	(CDS detail)
type	STS
link
xref	UniSTS:207196
definition	standard_name : BE136439

name	(CDS detail)
type	STS
link
xref	UniSTS:178448
definition	standard_name : AI462524

name	(CDS detail)
type	STS
link
xref	UniSTS:178451
definition	standard_name : AI646751

name	LOC626075 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234249 GeneID:626075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 ESTs, 9 Proteins product : similar to high mobility group nucleosomal binding domain 2 pseudo : _no_value transcript_id : XR_033564.1

clone name	MSMg01-496L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411N17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-303N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424F08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-417I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236N16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-136B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323N19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-156M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132F24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-109H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279H05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-424J09.T7 (MSMg01no424_j09.b1)	MSMg01-424J09.TJ (MSMg01no424_j09.g1)
ACC	AG518471	AG518472
length	756	755
length of high quality (start - end)	544 (47 - 590)	245 (78 - 322)
definition	CHROMAT_FILE: MSMg01no424_j09.b1 PHD_FILE: MSMg01no424_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:35 2005	CHROMAT_FILE: MSMg01no424_j09.g1 PHD_FILE: MSMg01no424_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:35 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCACTGCTAGCACTTTCTTTTCTCTTGCCCAGAAGCCTTGCCTTGT CAGGCAGGAGGAAGATTCTGAGCAATAAACTTTTACTGAACCAGATCTCA CAGAAGGAAAACCTTTTACACAAGCAAATATACATAAACTCACATACATT TATATACACATTTATGTACGTGCACTTATACACCTTCATGCACTCCAGTT GGACACAGGTATGTACTTATCTCATAATTACATACATATACATGCATCCA TACTTACATATGCATATGGAGCAAATGCCCAAGTGCCAGTGCAGAGTTCA TTCATTCTGGATGAAAAATGAGAAAGAAAAAACTTTTACCCCTTTACTGC TAAATGAATTAAACTAGCCTGTAAGAAAAGAACTTTGGGATGGACCATCC AGAGACTGCCCCACCTGGGGTTCCAACCCATAATCAGCCACCAAATGCAG ACACTATTGCATATTACAGCAAGATTTTGCTGAAAGGACCCTGATATAGC TGTCTCTTGTGAGGCTATGCCAGTGCCTGACAAATACAGAAGTGGATGCT CACAGTCATCTATAGGATGGAACAAAGGGCCCCCCATGGAGGGACTAGAG AAAGTACCCAAGGAGCTGAAGGGTCTCCAACCCTATAGGTGGGAAAACAA TATGGACTAACCAGTACCCCCAGAGCTCCGTGCCTCTAAGCGGATAATGA ACCAAA	NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCATAGGTTTGGTAGCAAAC ATCTTTATTCTTCAGTTGTTTACAACAAAATTAGTTAATTAAAAATGACC AGCATTTCCTATCCAAATTTGTTTTTTATGGTTATCTTCTTCTGACTCAA ATAAAAGGAGAGGATGGAGAACACTTGTCTTCCCAGGGCCAGGGCCTGGC TTCCAGTTCTGCAGTTCAGACGCCAACATGATAGTGCCGTGAGAATATTT ATTGTCAGTGTTGCGTTTTATATTTTTATAGAGACCAGAGATATGTTTGG TGGAGGCAAGGCATGGTGTAGGGGAAGAAGGTGCCTCTGTGGGGCCAACG CTGAGCCATCCCTTCCCCCTGAGGTACCAGCCAAGTATGGTATAGAATAG AGTTGGGGTAGGAGGGGGGTCATCTCTTCTTTCTCTTCTTCCCCTTTTTC CTTTCTTTTTTTTTCCCCTCTTTCTTTTTTCTTCCGCTCTTTTTTTCTTT TTCTTTTCTCCTCTCTTTTTTTCCTTTTTTTTCCTTTCCTTTTCCTTCCG TTTCTCTTTTTTTTGCCCTTCCTTCTTCCTCTCTTCCCTTGTTTTCTTCC TTCCTTGTTCCCCCTCTTTTTTTTTTCTTTCCTTATTGTCTCCTCCCCCT TTCCCCTTTTTCCCTTCCCTTTTCTTCTCACCTTTTTTACTCCCCTTTTT TCCCA
quality values	Open. Hide. 6 6 8 6 10 11 16 21 32 37 37 37 37 37 31 31 37 37 37 37 37 47 37 44 44 59 27 25 19 13 13 9 12 9 9 9 12 18 22 34 34 30 30 28 22 22 31 41 57 57 38 38 36 37 37 37 37 19 22 15 17 14 11 11 12 18 24 43 48 54 54 54 54 68 68 68 59 59 59 59 54 51 50 50 50 50 50 57 57 57 57 57 57 57 57 57 57 57 47 57 57 57 57 57 68 68 68 68 68 68 68 68 51 51 47 47 46 50 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 52 57 57 57 57 57 57 57 50 50 68 68 68 68 68 68 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 52 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 52 52 52 43 43 43 62 52 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 59 68 68 68 68 68 57 57 68 68 68 68 68 57 57 57 57 57 57 59 59 59 68 68 68 59 68 68 68 68 68 68 68 68 68 57 57 48 50 50 57 57 57 57 57 57 57 47 50 47 48 48 48 59 59 43 43 43 59 57 57 57 57 57 59 59 59 59 59 44 46 46 54 54 57 57 59 57 57 57 57 48 47 47 43 47 47 46 46 47 43 43 57 57 48 48 57 57 48 48 48 54 48 48 59 59 43 39 39 43 43 57 43 43 36 36 36 39 47 39 39 35 36 36 41 41 41 41 41 41 34 32 39 39 39 37 31 31 30 30 30 24 24 20 32 28 39 32 32 20 20 20 32 32 25 25 12 11 11 19 15 18 23 26 30 27 25 25 17 25 15 26 13 15 15 34 27 25 30 30 30 30 28 21 19 15 15 24 17 22 22 26 26 21 26 14 13 13 15 15 15 21 12 24 12 15 15 28 28 31 31 30 24 22 14 13 13 15 15 14 17 16 28 22 19 19 18 15 15 19 14 12 10 13 17 11 12 9 8 9 8 8 8 15 11 11 13 15 14 20 23 22 11 11 8 10 8 9 9 9 10 12 12 20 24 11 9 8 8 8 8 8 8 8 8 8 8 9 10 16 12 10 9 9 9 12 9 9 9 9 9 12 10 10 10 18 22 19 13 10 8 8 6 8 10 6 8 8 12 8 8 7 7 8 9 20 23 19 9 9 9 10 9 9 9 9 9 7 7 7 10 10 10 11 10 6 6 6 8 6 8 8 9 9 8 8 8 8 8 8 6 7 8 8	Open. Hide. 0 3 6 6 8 15 15 10 8 8 8 17 16 16 10 10 10 15 23 32 43 39 37 37 37 37 32 32 44 44 25 25 9 9 9 9 11 11 9 10 10 12 12 30 25 30 20 23 34 34 44 37 47 37 44 39 50 42 41 25 23 10 9 9 9 9 10 14 11 13 10 10 11 18 22 30 30 33 33 33 48 50 53 53 53 57 57 59 59 57 57 57 57 53 53 53 53 50 50 42 42 47 47 68 68 68 68 68 68 68 51 51 50 47 47 50 59 68 68 68 50 50 47 47 47 48 54 47 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 57 57 57 57 68 68 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 68 68 59 48 43 39 37 37 37 43 47 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 50 47 30 22 11 8 6 6 7 8 8 8 8 8 8 13 28 47 41 50 50 59 53 53 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 35 32 32 39 32 39 43 32 40 42 39 48 48 48 54 59 54 54 54 59 59 59 57 57 57 57 57 68 59 59 59 59 59 59 57 54 57 57 59 59 68 57 57 57 57 48 48 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 44 43 43 43 43 43 48 59 59 57 48 47 43 43 37 28 28 37 40 43 36 36 43 43 43 39 39 35 35 35 40 40 43 39 37 34 32 28 21 10 9 9 8 8 8 8 8 8 8 10 10 10 8 8 8 10 10 10 8 8 8 9 8 8 8 8 8 8 9 12 11 10 10 8 10 9 8 8 8 9 15 16 18 16 13 10 10 9 11 10 8 10 10 13 8 8 8 15 8 8 8 8 10 10 8 8 8 8 8 8 8 8 9 9 9 10 12 12 12 9 9 13 17 17 17 16 14 10 8 8 8 10 10 10 10 21 21 24 22 22 20 19 13 9 9 11 13 14 17 16 15 9 9 12 12 24 21 24 12 12 11 16 9 10 10 9 9 11 10 10 8 8 8 9 8 10 13 12 11 13 17 17 29 15 15 8 8 8 8 15 16 14 9 9 9 16 22 17 10 9 12 7 9 9 9 10 13 8 8 8 8 10 11 11 13 13 15 17 15 11 10 10 10 11 10 9 12 9 10 10 10 12 9 8 8 6 6 8 6 10 13 16 18 24 28 15 13 11 10 10 13 11 9 9 10 10 8 6 6 6 6 8 8 15 15 10 10 8 9 8 8 13 16 16 25 30 37 16 14 14 11 9 15 10 10 7 7 8 8 10 14 12 14 16 10 10 10 10 8 8 8 8 9 13 17 28 29 21 21 11 9 8 8 8 8 10 10 15 19 15 18 14 10 10 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no424_j09.g1 MSMg01no424_j09.g1 CHROMAT_FILE:
MSMg01no424_j09.g1 PHD_FILE: MSMg01no424_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:35 2005
         (245 letters)



>mm_chr1_107803437_107804079
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 241/245 (98%), Gaps = 2/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcataggtttggtagcaaacatctttattcttcagttgtttacaacaaaattagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aggtcataggtttggtagcaaacatctttattcttcagttgtttacaacaaaattagttg 260

                                                                       
Query: 61  attaaaaatgaccagcatttcctatccaaatttgttttttatggttatcttcttctgact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 attaaaaatgaccagcatttcctatccaaatttgttttttatggttatcttcttttgact 320

                                                                       
Query: 121 caaataaaaggagaggatggagaacacttgtcttcccagggccagggcctggcttccagt 180
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaataaaa--agaggatggagaacacttgtcttcccagggccagggcctggcttccagt 378

                                                                       
Query: 181 tctgcagttcagacgccaacatgatagtgccgtgagaatatttattgtcagtgttgcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctgcagttcagacgccaacatgatagtgccgtgagaatatttattgtcagtgttgcgtt 438

                
Query: 241 ttata 245
           |||||
Sbjct: 439 ttata 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 643
Length adjustment: 9
Effective length of query: 236
Effective length of database: 634
Effective search space:   149624
Effective search space used:   149624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information