BAC Information

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BAC

Clone NameMSMg01-424K19
Chromosome1 (Build37)
Map Location 35,869,568 - 36,012,396
singlet/doubletdoublet
Overlap geneLOC666283
Upstream geneArhgef4, BC043098, Plekhb2, LOC666261, LOC100041544
Downstream geneLOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424K19.T7 (MSMg01no424_k19.b1)MSMg01-424K19.TJ (MSMg01no424_k19.g1)
ACCAG518539AG518540
length720792
length of high quality
(start - end)
239 (76 - 314)258 (73 - 330)
definitionCHROMAT_FILE: MSMg01no424_k19.b1 PHD_FILE: MSMg01no424_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:41 2005CHROMAT_FILE: MSMg01no424_k19.g1 PHD_FILE: MSMg01no424_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,012,158 - 36,012,396)(35,869,568 - 35,869,824)
sequence
NTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGCGGATCCGC
GGAATTCTGTCTGTCCGCTAACTTACCATCTGCTTGTCAAGCATCATCTA
GAGACTCCTAGGAGCTAGGTACCCAGGCTCCAGAAGACAATAACCTCTGT
CCATAGACCTTCCAGATCGCAGGCCACCATGCCAGTTAGCTTTCAGTCAC
TGCGACAAATACCTGAGATAGAAAACTTGTAAGGAAGAAAGCTTTGCTCT
GTTGCACAAAGCCACCACACTTACTTTAGGGAATGGATTTGTGTCCTAGA
TTTTGGAGTCTCAGCCTATGTTTGTTTGGTCTTGTTGCTTTGGGCCTGTG
ACAAGTTGGGGACACATGGTGAATCAAAGCATTTGGCCTCAGGTGGAAAG
CAGAAGAAATAAAAAGAAAAGCTGGAGTCCCAATAACCAGTAGGATGACC
TAACTTCCTTGCAGGGAACTTAGCTCAGACTCTTTTTTTTTTTTTAAGAT
TTATTTATTTATTATATGTTAAGTACACTGTAGCTGTCTTTAGACATACC
AGAAGAGGACATCTGATCTCATTACAGATGGTTGTGAGCCACCATATGGT
TGCTGGGATTTGAACTCTTGACCCCCGGCAGAGCAGTCAGTGTTCTTATT
TGCTGAACCATCTCTTCAGCCCAGTTTACACTCTTATAGTCTCTTCCCTG
TCCCGTAGTCTCTTTTGTTG
CGATGATGTGGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAAATTCTGGATAAGGAATGTGTGACTCCAGGT
ACATAGGAGGAGGGGCACCCATTTTTAAGAGTGAAAGAGTGTGGGCCACC
TGTAGCCCTCTGATATCTGGCAAGCAAGTCTAGAAACCTCCTCAGGGTGG
CAAAAATGGTGCTTGTCATTCTCCTAGAATACAGGCACCTGGGGAGTATG
TTTATAACCTCACAAAAAATGTTCTGGGCAAGGGTTTTGTTGTTGTTGTT
GTTGTTGTTGTTTTGATGGGTTTTTTTTTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTNNNNNNNNNCCCCCNNNNNNCCCNCCCCTTCTTCCCCC
CCTCCCCTTTTTCCCTCCTTTCTTTTTTTTTCTCCTTTCCTCCTTCTTTT
TCTCCTCCCTTTCCCTCCTTCCTTTTTCCCCCCCTCTTTTCCCTTTTCTC
TTTTTTCTCTCTCCCTTTCTCTTTTTCCTTCTCCTTCTTCTTTTCTTTTC
TTTTTCTTTCTCTCCTCCCTCTTTTTTTTCCTTCTCTTTTTTTCCTTCTC
CCCTTTTTCCTTTTCTCCTTTTTTCTTCTCCTCTTTTTCTTTTTTCCCTC
TCCTTCCTTCCTCTCTCCTTTTCCTTTTTTTTTTTTTTTCTCTTTTTCCC
CTTTCTCTCCTCCCTCTCTCTTCTTCCTTTTTCCTCCTCTCCCCTTTCTT
CTCTCTCTTCTCCCTTTTCCTCTTCCTCCTTCTCTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_k19.b1 MSMg01no424_k19.b1 CHROMAT_FILE:
MSMg01no424_k19.b1 PHD_FILE: MSMg01no424_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:41 2005
         (239 letters)



>mm_chr1_36011958_36012596
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatctgcttgtcaagcatcatctagagactcctaggagctaggtacccaggctccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccatctgcttgtcaagcatcatctagagactcctaggagctaggtacccaggctccagaa 380

                                                                       
Query: 61  gacaataacctctgtccatagaccttccagatcgcaggccaccatgccagttagctttca 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gacaataacctctgcccatagaccttccagatcgcaggccaccatgccagttagctttca 320

                                                                       
Query: 121 gtcactgcgacaaatacctgagatagaaaacttgtaaggaagaaagctttgctctgttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtcactgcgacaaatacctgagatagaaaacttgtaaggaagaaagctttgctctgttgc 260

                                                                      
Query: 181 acaaagccaccacacttactttagggaatggatttgtgtcctagattttggagtctcag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acaaagccaccacacttactttagggaatggatttgtgtcctagattttggagtctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no424_k19.g1 MSMg01no424_k19.g1 CHROMAT_FILE:
MSMg01no424_k19.g1 PHD_FILE: MSMg01no424_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:41 2005
         (258 letters)



>mm_chr1_35869368_35870025
          Length = 658

 Score =  470 bits (243), Expect = e-137
 Identities = 251/257 (97%), Gaps = 6/257 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggataaggaatgtgtgactccaggtacataggaggaggggcacccatttttaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggataaggaatgtgtgactccaggtacataggaggaggggcacccatttttaagagt 260

                                                                       
Query: 61  gaaagagtgtgggccacctgtagccctctgatatctggcaagcaagtctagaaacctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagagtgtgggccacctgtagccctctgatatctggcaagcaagtctagaaacctcct 320

                                                                       
Query: 121 cagggtggcaaaaatggtgcttgtcattctcctagaatacaggcacctggggagtatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggtggcaaaaatggtgcttgtcattctcctagaatacaggcacctggggagtatgtt 380

                                                                       
Query: 181 tataacctcacaaaaaatgttctgggcaagggttttgttgttgttgttgttgttgttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataacctcacaaaaaatgttctgggcaagggttttgttgttgttgttgttgttgttgtt 440

                            
Query: 241 ------ttgatgggttt 251
                 |||||||||||
Sbjct: 441 gttgttttgatgggttt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)