NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCTACCTTCTTGAGTTCTTAATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTTCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGGGGGTTCATTTTCTGGGCTTCCATTCTATTTCATT
GGGCTACTTGGCTGTCTCTATACCAGGACCATGCAGTTTTTTATCACATT
GTCCTGTGATAAAGCTTTAAGTCTAGGATGGGGATTCCCCCAAAAGGTTT
CTTTATCCTTGCAAAAAGGTTTTTGTTTCCCTAGAGTTTT

NTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAA
TGGCTGAGAAGCACCTGAAAAAAAAATGTTCAACATCCTTAATCATCAGA
GAAATGCAAATCAAAATAACCCTGAGATTCCATCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATATGGAG
AAAGAGGAACACTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCA
CTCTGGAAATCAGTCGGCGGTTCCTCATAAAACTGGTGGCCCATTTTAAG
ACAAGTAATAGCTTAGCTTGCTGAACCGGGGTAGGTTCGGGAATCCTGTT
ACACAGAGAGAATTTGTCTGGTTCCATGTCCTCTGGAATTCTGAGTGTCA
GTGATCATATGACTCCTTCTTGCACATATTTCCTCATGGTTTGGGTAGAG
GGGTTATACCACTCTTAAGTGGGTGAGGTGTTGCATATTCTGTACATTGG
GCTCCAGCTCATATTTGGGCCAGGTTTACATGGGTTTGGTGTTGTTGTGG
AAATCAGTGGGGTGCCTGTAGGTGTAGGTGATGAACTTTTTCTTTTTTCT
TAGTACTTCTTTCTCCTTTTTTTACCTCTTAACCCTTTTATTCTATCCCC
TTTTCCTTATTCGCTTCCTTTTTCTTATTCTTCCTTTTATCTCCTCTTT

Query= MSMg01no424_n08.g1 MSMg01no424_n08.g1 CHROMAT_FILE:
MSMg01no424_n08.g1 PHD_FILE: MSMg01no424_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:53 2005
         (520 letters)



>mm_chr1_112750214_112751133
          Length = 920

 Score =  861 bits (445), Expect = 0.0
 Identities = 460/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 56  ccttaatcatcagagaaatgcaaatcaaaataaccctgagattccatctcacaccagtca 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 ccttaatcatcagagaaatgcaaatcaaaataaccctgagattccatctcacaccagtca 861

                                                                       
Query: 116 gaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatatggagaaagag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatatggagaaagag 801

                                                                       
Query: 176 gaacactcttccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtcg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaacactcttccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtcg 741

                                                                       
Query: 236 gcggttcctcataaaactggtggcccattttaagacaagtaatagcttagcttgctgaac 295
           ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 740 gcggttcctcagaaaactggtggcccattttaagtcgagtaatagcttagcttgctgaac 681

                                                                       
Query: 296 cggggtaggttcgggaatcctgttacacagagagaatttgtctggttccatgtcctctgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cggggtaggttcgggaatcctgttacacagagagaatttgtctggttccatgtcctctgg 621

                                                                       
Query: 356 aattctgagtgtcagtgatcatatgactccttcttgcacatatttcctcatggtttgggt 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 aattctgagtgtcagtgatcatatgactccttcttgcacatatttcctcatggtttaggt 561

                                                                       
Query: 416 agaggggttataccactcttaagtgggtgaggtgttgcatattctgtacattgggctcca 475
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaggggttatgccactcttaagtgggtgaggtgttgcatattctgtacattgggctcca 501

                                                        
Query: 476 gctcatatttgggccaggtttacatgggtttggtgttgttgtgga 520
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctcatatttgggccaggtttacatgggtttggtgttgttgtgga 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)