BAC Information

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BAC

Clone NameMSMg01-425C08
Chromosome1 (Build37)
Map Location 55,041,890 - 55,042,210
singlet/doubletsinglet
Overlap geneSf3b1
Upstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
Downstream geneCoq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425C08.T7 (MSMg01no425_c08.b1)MSMg01-425C08.TJ (MSMg01no425_c08.g1)
ACCAG518897AG518898
length788766
length of high quality
(start - end)
118 (39 - 156)317 (69 - 385)
definitionCHROMAT_FILE: MSMg01no425_c08.b1 PHD_FILE: MSMg01no425_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:17 2005CHROMAT_FILE: MSMg01no425_c08.g1 PHD_FILE: MSMg01no425_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATGCGCGGAATTCCTTGG
TTATACACTAAATGATTTAGCCCACATAGAGTGTATTTAATTTTATTTTA
TATTTTATGTATTTAAGTATTTTGTCTGCATGTGTGNCTGTGCACCATGT
ATGCCTCTGGTATCAGTGTATAGCTTCAGGAGAGGCGGGTGGTGNNTGGG
ATGCATTAAAGANNNNNNANCTTGCATGTGAATCCGCAATAGAAATGGGG
ATGGGNNNCNCNNNNNNGGNCCCNAACTGNNGAAACACCCCCCAGNCCGC
CAATTTTTTTAATAAAAAAGCATCAAATTTTAAAAAAAAAAAAACCGGGC
CTAAAAAAAACCCAAAAAAAAAAAAACCCCAAAAACCCAAATTTGGCTGG
GCCTTTTTAAAAACCTTTTTTTTTGAAAAAAAAAAAANCCTTTTTTCCCC
CANTCGGCCCCCGAGAAAAAAAAATTTTCCCCACCCCACAAAAAATTTTT
TTTAAAACAAAAGGGGNATACAAAAAAAAAAACCCCCCCCCCCCTTTTTG
GTTAAAAAAATTTCCCGCGACCCAATTAAAAAANTCNCCNNAAANAACCC
CAAAAAAAAAACCCCACACCCCCCNTAAAAAAAATAAAAAAAAAACAANT
ANNCCCCCTTCACAAAAACTCCCAACNNCNAAAAAAANAAAGGAAAAAAA
AAAAACAATTTTCATTAAAAANAAACAAAAAACAAACCNTTTTCCCCCCA
CACCNCCCNAACACCAAAAATTTTTTTTGTTTTTTTTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGTTCTTAAGGGGACAGAGGGGTGGGTTTTT
CTCTGGGCTTTGGTTTTTTTTTTCTCTGGGCATTGCCCTCTGATGGAATT
GATATTCTTTGGCTGTTTGATTTTATTTTTTATATTGTATTTTTAAAATT
TGTTGTATGGTGCCCTGTGAGCATCAAGAACCACCAGATAAATAAAACTT
ATCACATCTAAAGTCTTAGTATACCAGTTCTTAATCTTAGTTGACTCTCT
ATGGTATCATGCTGTGTTTGCTTTGTTGTGGTTTACCATTTTAACTACTT
AGAGCTCTTTGGGTTGTTGGTCAAGCAAGTGAACTGAGTCGGGTATGAGC
ACAGGTCTGTACTCCCAGCACTGTTCATAAGCAGGAGGGTTACTAGTTTT
CCTTTTTGTAGTATGTATAAGACCCTACCATACCTGACATAATTTGCAAG
AAGATAATTGCAGGCTTACCATATCCCCACTTTGGTTCATGCTTTCCGTG
TTGTTTTCCCTTTTTCACATTTTAACGCCTCATCTTTTTTTTTCAATCCC
ATAACTCCTCCTTGTCCCCCGTCTTCTTCTTTTTCGTTTTACGCCTTTAA
TTTCCCTATTTCCTTTTTTGTCCTATCTATTGCCCTCTCTCCATCTTTTG
CTTTTATTTTTCCCCTTACCCCCTCTATCCTTTCTTCATTACTCTCCCTT
CTCTCCTTCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_c08.g1 MSMg01no425_c08.g1 CHROMAT_FILE:
MSMg01no425_c08.g1 PHD_FILE: MSMg01no425_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:17 2005
         (317 letters)



>mm_chr1_55041557_55042273
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 314/321 (97%), Gaps = 4/321 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttcttaaggggacagaggggtgggtttttctctgggctttggttttttttttctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atgttcttaaggggacagaggggtgggtttttctctgggctttggttttttttttctctg 595

                                                                       
Query: 61  ggcattgccctctgatggaattgata-ttctttggctgtttgatttta---ttttttata 116
           |||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||
Sbjct: 594 ggcattgccctctgatggaattgatatttctttggctgtttgattttatttttttttata 535

                                                                       
Query: 117 ttgtatttttaaaatttgttgtatggtgccctgtgagcatcaagaaccaccagataaata 176
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 534 ttgtatttttaatatttgttgtatggtgccctgtgagcatcaagtaccaccagataaata 475

                                                                       
Query: 177 aaacttatcacatctaaagtcttagtataccagttcttaatcttagttgactctctatgg 236
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaacttatcacatctaaagtcatagtataccagttcttaatcttagttgactctctatgg 415

                                                                       
Query: 237 tatcatgctgtgtttgctttgttgtggtttaccattttaactacttagagctctttgggt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tatcatgctgtgtttgctttgttgtggtttaccattttaactacttagagctctttgggt 355

                                
Query: 297 tgttggtcaagcaagtgaact 317
           |||||||||||||||||||||
Sbjct: 354 tgttggtcaagcaagtgaact 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)