XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAGCAA
GTGTGCGCAAAAAACAAGAACTTGTTCAGCAAGTTCGGGGCTCCGTGTGG
GGATGGAGGATCTTTGGGGGAGAGGCTCTTCTTAGGGAATCTTAGGGATC
TGCACGTGAGCAGATCATGGTAACTCTCCCTTGTAGTCCCCACACTCTGA
AGGCAAGGGCAGGGGGACTATAGCAGTCAGAGGCCAACCTGGTCTACATA
GTGAGTTCAGGGCTATATCCAGGGGTGCAGAGTGCGATCTGTCTCAAAAA
AAAAAAAAAATCTGTCTTTAATAAAAGAACAAAACCACATGACTGATCCC
AGCTCCTGTGCACAGTGTAACATCACTTGTGAGTGTGTATGTGTTTGCGT
GCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTCCTATTCCCCTGTCCTTTTCCTTTTCTCTTTTTTTTGTTTGC
TTTCTCCCTTCTCCTTTTCTTTCTCTCCTTCCCTTCTTCTTTGCTTTCTC
TGCTTTCTACCTTGTTTTGTTTTTCTCTTCTTTTTCTTTTCCCCCCTGTT
ATTTTTCACTTACCATTGCTAACTTTCGTACTCTCTTCTTTCGCCTCCTC
ATCTTCTTTTTTTTTTTTTTCCTTCTTTTTTAACTTATTGATGACTCACT
ACTTGGTCAATTTCACTCCTTTTTTTTTCCCCCACATCTCTTTTTTTCTC
CCTAACTCCTATTCTCCCTTCTCTCCTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCATTGGCACAAGAATCCTGGAATAATTCTTGG
GGAAAAAAAAAGGAGTCATTACATCCAAATCCTTTCTTTCTATTGCCAAG
GGCACAGAAGTTTTGTTTGGTTTTGTCTCTTTGTTTTGCTATCTTTGGAA
CTTTGCCTTGATACTGAAGAATGTGGTAGGGATTTACCACGACTGCCTAC
AAGGGATAATGGCATATGAAAAGCCTTTAAGGCAGTGGTTCTCAATCTCC
CAAACACAGCAACCCTCTAATACAGTTCCTTGTGCTACGGTGACCCCCAA
CAATAAAATTATTTTTGTTGCTACTTCATAACTGTACATTTGCTACTGTT
GTGTATGAATCATAGTGTAAATCTCTGATATGCAACCCCTGTGAAAGAGT
TGTTTGACCCCAGGGGGTTGCAACCCACAGCTTGAGAGCTGTTGCCCTAA
TGTAAAATGTTATCAATCATTTCTGTTACCAAATTTCCATGAGTGTGTTT
CATTGATCTCATCTTTAATAGAAATTTCTAGCCTTGCTCCCTTAACACCG
GCATAAATGTCCAAGGTAACTCTAATAGGGTCTTTAAAACATTTTACCAT
ATTAATTGGACCCCCTCCGCGAGAATCTGATAAATTTATGGGGGGTGGAA
AATTAAATTTGGAAAAATATAAAAACCACTCGAGGTTTCCCAAAATTGTG
CCCTCTTACCA

Query= MSMg01no425_l09.g1 MSMg01no425_l09.g1 CHROMAT_FILE:
MSMg01no425_l09.g1 PHD_FILE: MSMg01no425_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:00 2005
         (467 letters)



>mm_chr1_40096618_40097480
          Length = 863

 Score =  735 bits (380), Expect = 0.0
 Identities = 404/414 (97%), Gaps = 4/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accattggcacaagaatcctggaataattcttggggaaaaaaaaaggagtcattacatcc 60
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 412 accattggcacaagaatcctggaataattcttgg----aaaaaaaggagtcattacatcc 357

                                                                       
Query: 61  aaatcctttctttctattgccaagggcacagaagttttgtttggttttgtctctttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaatcctttctttctattgccaagggcacagaagttttgtttggttttgtctctttgttt 297

                                                                       
Query: 121 tgctatctttggaactttgccttgatactgaagaatgtggtagggatttaccacgactgc 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 296 tgctatctttggaactttgccttgatactgaagaatgtggtgggggtttaccacgactgc 237

                                                                       
Query: 181 ctacaagggataatggcatatgaaaagcctttaaggcagtggttctcaatctcccaaaca 240
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 236 ctacaagggataatggtatatgaaaagcccttaaggcagtggttctcaatctcccaaaca 177

                                                                       
Query: 241 cagcaaccctctaatacagttccttgtgctacggtgacccccaacaataaaattattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cagcaaccctctaatacagttccttgtgctacggtgacccccaacaataaaattattttt 117

                                                                       
Query: 301 gttgctacttcataactgtacatttgctactgttgtgtatgaatcatagtgtaaatctct 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gttgctacttcataactgtacgtttgctactgttgtgtatgaatcatagtgtaaatctct 57

                                                                 
Query: 361 gatatgcaacccctgtgaaagagttgtttgaccccagggggttgcaacccacag 414
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 56  gatatgcaacccctgtgaaagagttgtttgactccagggggttgcaacccacag 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 863
Length adjustment: 10
Effective length of query: 457
Effective length of database: 853
Effective search space:   389821
Effective search space used:   389821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)