Query= MSMg01no425_n16.b1 MSMg01no425_n16.b1 CHROMAT_FILE:
MSMg01no425_n16.b1 PHD_FILE: MSMg01no425_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:11 2005
(524 letters)
>mm_chr1_40726580_40727507
Length = 928
Score = 884 bits (457), Expect = 0.0
Identities = 510/531 (96%), Gaps = 7/531 (1%)
Strand = Plus / Minus
Query: 1 gaagttaaaagtcagcagaaagggcttccaacaacactttgttatga----accaccaga 56
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 573 gaagttaaaagtcagcagaaagggcttccaacaacactttgttatgaacataccaccaga 514
Query: 57 gatatcaaagggccgccagtgagaagtcacaccatcagggacgctgttttcccagatgct 116
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 513 gatatcaaagggccgccagtgagaagtcacaccatcagggacactgttttcccagatgct 454
Query: 117 ttgtttagtagtaacatctcatcatgggtgctgaccaggtgacccaggcttgagaaggag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttgtttagtagtaacatctcatcatgggtgctgaccaggtgacccaggcttgagaaggag 394
Query: 177 ccaaacgaaccacggaaatagaaagggctcaaaagccttcttgggcactcacaggggact 236
|||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 393 ccaaacaaaccacggaaatagaaagggctcagaagccttcttgggcactcagaggggact 334
Query: 237 gtgccagtctccacgctactaagagtagaactgaagagggaaaggcaaccacatatctct 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgccagtctccacactactaagagtagaactgaagagggaaaggcaaccacatatctct 274
Query: 297 tctgatgagcagagtcttcagccccaccccttgcctaaatcgattctggacacatgaatg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tctgatgagcagagtcttcagccccaccccttgcctaaatcgattctggacacatgaatg 214
Query: 357 taaaaggactgcataggcataa---tttttttgcagcctacttttaataaggattcagcc 413
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 213 taaaaggactgcataggcataaggttttttttgcagcctacttttgataaggattcagcc 154
Query: 414 tgtcctctagcccaccacccagcagaggtagcggaagaaatgttattaggatatgaggga 473
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 153 tgtcctctagcccaccacccagcagaggtagcggaagagatgttatgaggatatgggggg 94
Query: 474 agtgggcctgttcagcaatagttctttggtggtgagccaaatcttctttag 524
||||| |||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 93 agtggacctgctcagcaatagtgctttggtggtgagcccaatcttctttag 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 928
Length adjustment: 10
Effective length of query: 514
Effective length of database: 918
Effective search space: 471852
Effective search space used: 471852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_n16.g1 MSMg01no425_n16.g1 CHROMAT_FILE:
MSMg01no425_n16.g1 PHD_FILE: MSMg01no425_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:11 2005
(533 letters)
>mm_chr1_40571072_40572004
Length = 933
Score = 934 bits (483), Expect = 0.0
Identities = 522/535 (97%), Gaps = 4/535 (0%)
Strand = Plus / Plus
Query: 1 actttaggagaccacagtggcagtaactttgggcttaactttaaggtctatat-caagat 59
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct: 201 acttcaggagaccacactggcagtaactttgggcttaactttaaggtctatattca-gat 259
Query: 60 ctctgaggtttgataaggacactcccaacgcccaggcactctgaatgtacctcagcctga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctgaggtttgataaggacactcccaacgcccaggcactctgaatgtacctcagcctga 319
Query: 120 attaaaccactatcatgaacaatgcctggtctgtccatttccccttcatcctcagtattc 179
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 320 attaaaccattatcatgaacaatgcctggtctatccgtttccccttcatcctcagtattc 379
Query: 180 ctcctttaatcccatttagattttggattacctgg-ctgtccctgccacaccctgggagt 238
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 380 ctcctttaatcccatttagattttggattac-tgggctgtccctgtcacaccctgggagt 438
Query: 239 ctaagctcatgtgccctcatgtgctttcctctgaacctgcaataggtggtaggaaaatct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 ctaagctcatgtgccctcatgtgctttcctctgaacctgcaataggtggtaggaaaacct 498
Query: 299 caaatccttttggaatttgagctagttccacaactagcatgaatacatgattttatttat 358
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 caaatccttttgggatttgagctagttccacaattagcatgaatacatgattttatttat 558
Query: 359 ttatttatctatttatttattggcttagacctgccctcagttgctaactcttctcttaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttatttatctatttatttattggcttagacctgccctcagttgctaactcttctcttaga 618
Query: 419 ttttcaccttcacctcaggtcaacacttaccttgcccccactctgacatgaacttgggct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttcaccttcacctcaggtcaacacttaccttgcccccactctgacatgaacttgggct 678
Query: 479 ctgcttttattttatgctcttctccagccttgtgctgaaacaatccccatggttt 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgcttttattttatgctcttctccagccttgtgctgaaacaatccccatggttt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
