XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTCAAA
TTGTCTGTCTATGAATGTGCATTTTCATACATAAAGTAGATATTTAAACC
AACTATCAATTTATACCTCAAAAATAATTATGTCTGTATCAACATAAAAT
GAAATCAAATTACCACAGAAGTTAATTGTTTATAAAATCCAGTGTCTTGT
ACCAATTAAAGAGTTGCTTAGTTTTTTTTTGGGGGGGGTGCTTTTTTCTT
TCTTTTCTCTTTTCTTTCTTTCTTTTTTTTTTTTACATGAGGTGACACGA
GAATATTTCAGTGTTAAATTATCATACATATGACTCAGAATATACCTTCT
GTAACTGAATGGCTGAACATGTGCAGAGAAAGAAAGAAAATCATGGGTAA
GTTCTATAGTCTATTATTAAATCAATTCAGGCAAGTGCCACTAGGAGGTT
GTTTAATATAGAAGGACATCAAATGACACACATTTGACATACATACACCT
GCCAGTGCTGAAAGTTTGTAAATTTCAATTTTCTTTAGGTATTTTATATT
TTGTTATTGTGAGTTTGTCTCTCTCAGTCTCTGTCTGTCTCTGTCTCTTT
CTCTTTCTCCCTGTCTCTCTCTTCTCTGNCTGNCTGGCTGTCTCTCTCTC
TCTTAAACAACACACACACACACACACACTTTTTTATACATACACAAACT
TTGACACTTGTCTGGTAAGGCTAAAAATAAACCCCCCGGAAGGCCTCTAC
TTTGTAATTTTAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTGAAACTAGATGTTCCTTGATGTACTGATTTTTAAAC
AATTAAAAACTGAGACATGGCACACAGCACAGCACAGTCCTTATGGCCCA
GTAGTTTTCTGTGTGTTTTCATCTTATAAACAATGCAGTAACTGCACAAT
GGTAGTACTACTTTAATGCTTGACTTGCAAAGAATGTTTGAAGAAATTAT
TAGAAAAATGTAATAGAGCCAACACTGGTACCCCAAGAAAGGAAAAAATT
ATTAAAGTTATGAAATAAGTGTTGCATGCCATTTGAGAGTGTATAGAATG
TGTAAAATCGTATATTAGTAAAACTAAGTCAAAATACTGGGACTTTTAGG
GGAGTCATTGTGAGCAATGTGCTGAAGCAGAAAGCTAGCATAACTATTCA
GTTAAGGGTTAACTTGATTCTTTCTTGCCATGGCCTGACAGCTTTGTCCA
TGTCATTTATCATTACACCTTCACAAGAAAATGCAAGTAGCTCAGCTCAG
AGCTCTAGGCTTTGAAGTATAATAAGGTTAAGTTTAATAATGATAAGTTG
CAATTATTATTATTTTGGCAATAGNCCTGGGAATAGGAAGTTGAAACTCT
GGGGAACAATGTAATTCCTGATCCTTGTGGGAAAGGTTATCCCCTTGATT
TTGATTATCCAGGATAAACAAAACCTTCTTTTTACCGCCTTTGAAAAACA
AAAAAAATGGGGGAAAA

Query= MSMg01no425_n21.b1 MSMg01no425_n21.b1 CHROMAT_FILE:
MSMg01no425_n21.b1 PHD_FILE: MSMg01no425_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:12 2005
         (579 letters)



>mm_chr1_114356529_114357507
          Length = 979

 Score = 1089 bits (563), Expect = 0.0
 Identities = 573/577 (99%), Gaps = 2/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactcaaattgtctgtctatgaatgtgcattttcatacataaagtagatattta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccactcaaattgtctgtctatgaatgtgcattttcatacataaagtagatattta 262

                                                                       
Query: 65  aaccaactatcaatttatacctcaaaaataattatgtctgtatcaacataaaatgaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaccaactatcaatttatacctcaaaaataattatgtctgtatcaacataaaatgaaatc 322

                                                                       
Query: 125 aaattaccacagaagttaattgtttataaaatccagtgtcttgtaccaattaaagagttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaattaccacagaagttaattgtttataaaatccagtgtcttgtaccaattaaagagttg 382

                                                                       
Query: 185 cttagttttttttt--ggggggggtgcttttttctttcttttctcttttctttctttctt 242
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttagttttttttttgggggggggtgcttttttctttcttttctcttttctttctttctt 442

                                                                       
Query: 243 ttttttttttacatgaggtgacacgagaatatttcagtgttaaattatcatacatatgac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttttttttttacatgaggtgacacgagaatatttcagtgttaaattatcatacatatgac 502

                                                                       
Query: 303 tcagaatataccttctgtaactgaatggctgaacatgtgcagagaaagaaagaaaatcat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcagaatataccttctgtaactgaatggctgaacatgtgcagagaaagaaagaaaatcat 562

                                                                       
Query: 363 gggtaagttctatagtctattattaaatcaattcaggcaagtgccactaggaggttgttt 422
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggataagttctatagtctattattaaatcaattcaggcaagtgccactaggaggttgttt 622

                                                                       
Query: 423 aatatagaaggacatcaaatgacacacatttgacatacatacacctgccagtgctgaaag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatatagaaggacatcaaatgacacacatttgacatacatacacctgccagtgctgaaag 682

                                                                       
Query: 483 tttgtaaatttcaattttctttaggtattttatattttgttattgtgagtttgtctctct 542
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 683 tttgtaaatttcaattttctttaggtattttatattttgttcttgtgagtttgtctctct 742

                                                
Query: 543 cagtctctgtctgtctctgtctctttctctttctccc 579
           |||||||||||||||||||||||||||||||||||||
Sbjct: 743 cagtctctgtctgtctctgtctctttctctttctccc 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)