MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-426M04
Chromosome	1 (Build37)
Map Location	181,255,928 - 181,256,421
singlet/doublet	singlet
Overlap gene	Smyd3
Upstream gene	Hnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream gene	LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Hnrpu (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:51810 MGI:1858195
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Efcab2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68226 MGI:1915476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D230039L06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240945 MGI:3045335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif26b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269152 MGI:2447076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smyd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69726 MGI:1916976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC433941 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 540 ESTs, 4 Proteins

name	Tfb2m (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15278 MGI:107937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040874 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	9630058J23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226744 MGI:2445141
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sccpdh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109232 MGI:1924486
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1305 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383592 MGI:2686151
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins

name	Ahctf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226747 MGI:1915033
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040914 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100042190 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042190
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 122 ESTs, 10 Proteins pseudo : _no_value

name	Cdc42bpa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226751 MGI:2441841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 122 ESTs, 12 Proteins

name	Cabc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67426 MGI:1914676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psen2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19165 MGI:109284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hnrpu (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7949050 GeneID:51810 MGI:1858195
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein U transcript_id : NM_016805.1

name	Efcab2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31541840 GeneID:68226 MGI:1915476
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF-hand calcium binding domain 2 transcript_id : NM_026626.2

name	D230039L06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803292 GeneID:240945 MGI:3045335
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D230039L06 gene transcript_id : NM_177724.3

name	Kif26b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328422 GeneID:269152 MGI:2447076
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 26B transcript_id : NM_177757.3

name	Smyd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130353 GeneID:69726 MGI:1916976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SET and MYND domain containing 3 transcript_id : NM_027188.3

name	LOC433941 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245445 GeneID:433941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 540 ESTs, 4 Proteins product : similar to ribosomal protein transcript_id : XM_001478364.1

name	Tfb2m (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378778 GeneID:15278 MGI:107937
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor B2, mitochondrial transcript_id : NM_008249.3

name	LOC100040874 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245384 GeneID:100040874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100040874 transcript_id : XM_001475424.1

name	9630058J23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328475 GeneID:226744 MGI:2445141
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9630058J23 gene transcript_id : NM_146105.3

name	Sccpdh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382199 GeneID:109232 MGI:1924486
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : saccharopine dehydrogenase (putative) transcript_id : NM_178653.3

name	Gm1305 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245388 GeneID:383592 MGI:2686151
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins product : gene model 1305, (NCBI) transcript_id : XM_357140.6

name	Ahctf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26006852 GeneID:226747 MGI:1915033
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT hook containing transcription factor 1 transcript_id : NM_026375.1

name	LOC100040914 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245392 GeneID:100040914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100040914 transcript_id : XM_001475479.1

name	Cdc42bpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364568 GeneID:226751 MGI:2441841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 116 ESTs, 8 Proteins product : Cdc42 binding protein kinase alpha, transcript variant 16 transcript_id : XM_991276.1

name	Cdc42bpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364570 GeneID:226751 MGI:2441841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 108 ESTs, 8 Proteins product : Cdc42 binding protein kinase alpha, transcript variant 14 transcript_id : XM_991198.1

name	Cdc42bpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364572 GeneID:226751 MGI:2441841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 110 ESTs, 10 Proteins product : Cdc42 binding protein kinase alpha, transcript variant 15 transcript_id : XM_991226.1

name	Cdc42bpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364574 GeneID:226751 MGI:2441841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 105 ESTs, 10 Proteins product : Cdc42 binding protein kinase alpha, transcript variant 13 transcript_id : XM_991179.1

name	Cabc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778881 GeneID:67426 MGI:1914676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chaperone, ABC1 activity of bc1 complex like (S. pombe) transcript_id : NM_023341.2

name	Psen2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755187 GeneID:19165 MGI:109284
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : presenilin 2 transcript_id : NM_011183.1

name	Hnrpu (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949051 GeneID:51810 MGI:1858195
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : nuclear matrix protein sp120; scaffold attachment factor A product : heterogenous nuclear ribonucleoprotein U protein_id : NP_058085.1

name	Efcab2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386110 CCDS:CCDS15557.1 GeneID:68226 MGI:1915476
definition	codon_start : 1 product : EF-hand calcium binding domain 2 protein_id : NP_080902.1

name	D230039L06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244198 CCDS:CCDS15558.1 GeneID:240945 MGI:3045335
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC240945 protein_id : NP_808392.1

name	Kif26b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328423 CCDS:CCDS15559.1 GeneID:269152 MGI:2447076
definition	codon_start : 1 exception : mismatches in translation note : N-11 kinesin product : kinesin family member 26B protein_id : NP_808425.2

name	Smyd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312378 CCDS:CCDS15560.1 GeneID:69726 MGI:1916976
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0018024 - histone-lysine N-methyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016568 - chromatin modification [Evidence IEA] codon_start : 1 note : zinc finger, MYND domain containing 1 product : SET and MYND domain containing 3 protein_id : NP_081464.1

name	LOC433941 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245446 GeneID:433941
definition	codon_start : 1 product : similar to ribosomal protein protein_id : XP_001478414.1

name	Tfb2m (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490373 CCDS:CCDS15561.1 GeneID:15278 MGI:107937
definition	codon_start : 1 note : house-keeping protein 1 product : transcription factor B2, mitochondrial protein_id : NP_032275.2

name	LOC100040874 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245385 GeneID:100040874
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475474.1

name	9630058J23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559922 CCDS:CCDS15562.1 GeneID:226744 MGI:2445141
definition	codon_start : 1 product : hypothetical protein LOC226744 protein_id : NP_666217.2

name	Sccpdh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520019 CCDS:CCDS15563.1 GeneID:109232 MGI:1924486
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0047131 - saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity [Evidence IEA] codon_start : 1 product : saccharopine dehydrogenase (putative) protein_id : NP_848768.1

name	Gm1305 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245389 GeneID:383592 MGI:2686151
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357140.6

name	Ahctf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26006853 CCDS:CCDS15564.1 GeneID:226747 MGI:1915033
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016363 - nuclear matrix [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IMP] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : embryonic large molecule derived from yolk sac; putative transcription factor; AT hook containing transciption factor 1 product : transcription factor ELYS protein_id : NP_080651.1

name	LOC100040914 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245393 GeneID:100040914
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475529.1

name	Cdc42bpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364569 GeneID:226751 MGI:2441841
definition	codon_start : 1 product : Cdc42 binding protein kinase alpha isoform 16 protein_id : XP_996370.1

name	Cdc42bpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364571 GeneID:226751 MGI:2441841
definition	codon_start : 1 product : Cdc42 binding protein kinase alpha isoform 14 protein_id : XP_996292.1

name	Cdc42bpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364573 GeneID:226751 MGI:2441841
definition	codon_start : 1 product : Cdc42 binding protein kinase alpha isoform 15 protein_id : XP_996320.1

name	Cdc42bpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364575 GeneID:226751 MGI:2441841
definition	codon_start : 1 product : Cdc42 binding protein kinase alpha isoform 13 protein_id : XP_996273.1

name	Cabc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778882 CCDS:CCDS15566.1 GeneID:67426 MGI:1914676
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : chaperone, ABC1 activity of bc1 complex like protein_id : NP_075830.2

name	Psen2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755188 CCDS:CCDS15567.1 GeneID:19165 MGI:109284
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence TAS] [Evidence ISS]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0042987 - amyloid precursor protein catabolism [Evidence ISS]; GO:0042640 - anagen [Evidence IGI]; GO:0001708 - cell fate specification [Evidence IGI]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence ISS]; GO:0007220 - Notch receptor processing [Evidence ISS]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0043065 - positive regulation of apoptosis [Evidence IGI]; GO:0043085 - positive regulation of enzyme activity [Evidence ISS]; GO:0016485 - protein processing [Evidence ISS]; GO:0051605 - proteolysis during protein maturation [Evidence IGI] codon_start : 1 exception : mismatches in translation product : presenilin 2 protein_id : NP_035313.1

name	LOC666354 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666354
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:210048
definition	standard_name : RH136053

name	(CDS detail)
type	STS
link
xref	UniSTS:277316
definition	standard_name : HNRPU_1518

name	(CDS detail)
type	STS
link
xref	UniSTS:162544
definition	standard_name : RH125798

name	(CDS detail)
type	STS
link
xref	UniSTS:268990
definition	standard_name : MARC_26419-26420:1036768776:5

name	(CDS detail)
type	STS
link
xref	UniSTS:162314
definition	standard_name : RH125496

name	(CDS detail)
type	STS
link
xref	UniSTS:31692
definition	standard_name : WI-7584

name	(CDS detail)
type	STS
link
xref	UniSTS:79572
definition	standard_name : WI-8450

name	(CDS detail)
type	STS
link
xref	UniSTS:178527
definition	standard_name : AW557595

name	(CDS detail)
type	STS
link
xref	UniSTS:162363
definition	standard_name : RH125549

name	(CDS detail)
type	STS
link
xref	UniSTS:268469
definition	standard_name : MARC_20677-20678:1024509130:1

name	(CDS detail)
type	STS
link
xref	UniSTS:49593
definition	standard_name : A007A33

name	(CDS detail)
type	STS
link
xref	UniSTS:10169
definition	standard_name : D14S1285

name	(CDS detail)
type	STS
link
xref	UniSTS:207257
definition	standard_name : C86794

name	(CDS detail)
type	STS
link
xref	UniSTS:128922
definition	standard_name : D1Mit62

name	(CDS detail)
type	STS
link
xref	UniSTS:128449
definition	standard_name : D1Mit116

name	(CDS detail)
type	STS
link
xref	UniSTS:128767
definition	standard_name : D1Mit405

name	(CDS detail)
type	STS
link
xref	UniSTS:128674
definition	standard_name : D1Mit315

name	(CDS detail)
type	STS
link
xref	UniSTS:110016
definition	standard_name : AU047954

name	(CDS detail)
type	STS
link
xref	UniSTS:234276
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234157
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:167290
definition	standard_name : D1Ertd704e

name	(CDS detail)
type	STS
link
xref	UniSTS:124622
definition	standard_name : 46.MMHAP31FLH4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:143348
definition	standard_name : Hkp1

name	(CDS detail)
type	STS
link
xref	UniSTS:178529
definition	standard_name : AW214504

name	(CDS detail)
type	STS
link
xref	UniSTS:165125
definition	standard_name : AV011447

name	(CDS detail)
type	STS
link
xref	UniSTS:234277
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:165127
definition	standard_name : AI462003

name	(CDS detail)
type	STS
link
xref	UniSTS:234278
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:207258
definition	standard_name : AI303601

name	(CDS detail)
type	STS
link
xref	UniSTS:178530
definition	standard_name : AI266870

name	(CDS detail)
type	STS
link
xref	UniSTS:273073
definition	standard_name : PMC317124P2

name	(CDS detail)
type	STS
link
xref	UniSTS:273074
definition	standard_name : PMC317124P3

name	(CDS detail)
type	STS
link
xref	UniSTS:273072
definition	standard_name : PMC317124P1

name	LOC100042190 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149245447 GeneID:100042190
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 122 ESTs, 10 Proteins product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_033682.1

clone name	MSMg01-427A20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-129F04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-234J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492E19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-327D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495I03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-328A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035D01
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-426M04.T7 (MSMg01no426_m04.b1)	MSMg01-426M04.TJ (MSMg01no426_m04.g1)
ACC	AG520122	AG520123
length	1,095	781
length of high quality (start - end)	---	497 (68 - 564)
definition	CHROMAT_FILE: MSMg01no426_m04.b1 PHD_FILE: MSMg01no426_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:25 2005	CHROMAT_FILE: MSMg01no426_m04.g1 PHD_FILE: MSMg01no426_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:25 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTGGCTTATTTTTTATTCCTCCATAATTGATAATATTTCATATATATTCA CATAATACTCCTTCTTTATACTTTCTTCTTCTCTCTCTTTTCACATATTT TATTCTTCTACAAATACTAGATATTAATAATATATCCATTATTTATATAT TTCTATGATATCACGTCAACGTCATATTATTAACGATAGTACGTTTAGTT AGTCTATTAGTTTAGTTTAGATTTGTATTCTTACATTAATATTTAGTATA AGTTTAATTATACGTTTAGCTATATTTTTCTTTATATCAATAGTCATTAT TTTATTTATTATATCACTTATTTACTATCTTACTATTAATTTTCTTTATT TATTAATATAATATATTTATTTAATAATTTATATATTCTACATTAATATA AAACATATTATATTTACACTTATATTATTCATAAAAATAAATTATAACAT AAAAAATGATAATTATTATATAAACATTAAAATAAACATTATACATAAAT TAATAATTACTACTCACTATTCACTACTTAATAAAATATAACTCTATATA AACATACTACATATTACAAATTTATTATACTCTATTAATTAATTTTCTTA TTTTAATTTTCATATAATAAATTTTTATCATTCATATAATTTTATTATTA ACTATTTTATTTATTTCTTTTTTTATATATCTTTTCTCATTTATAACATA TATTTCTATTATCTATTTTCTAAAATATATATTTTTTTTAATACACCTAT TATTAATAATTTTAATAATTTTATAATTATCTAAATTATATTTTATTATA AATTATTTTTATTTATATTTTGATTCCCTATATATAATTCACTCATAATT ATTTTATTAAACTTATTAATAATAATTAATATTNATTCTCTTTATATATT TATATTTCATATTTTTATTATTCTCAATTATTAATATATATAAATATATC ATCTTATATCACTCATCTCTTAATAATATTAACAAATATATATAACTATA CTAATAATAATCATATACATATTATATAATACTATATCTCACATAATATA ATTATTATTAGCTATTTATATATTATATTATATCTATTTATATTT	TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXAGGTGCTTGCTGCCTTATTTGTTGAATCATTGG TTGGTTTTTCAAGATGGCTGAAGCGTCCATCTTCAGTATCTACCTGTATA AACATGGATGGAGGTTGGCAGGCTTTTATGTAGCTCTATTTCTTGAGGTG GCTTAAGTCCCACGCAGTGATGCTGCTCCTCAGCTTCCCTGAGGGACATC CAGAGACCAAGTTCCCGAAGGAAGGTGAGCTCATCTGATTCAATCAAATC AACAGCAATCGTGGCATGAAGAGGCTGAGGAGTCACCCTGCGGTGTGGGG CACTGACTGAACACCGCAGCAAGTGGCTTCTCCGGGAATGACTTCAACCT GACAAGTGACATTGATAAACTCGTCACTAATACGTCTACTTCAGTATTTC TCAAGGATGGCTCTTTGGCAGTCAAAAGGATATACCCAGGGGGCTCAGGC ACAATACATACTCCTGATATACCTTCCAGATTGGGGCAATAGTCTCACGA GGAAGGAGGCCAAGGAAGCCCTTCACAAACTCCCCAGTATACCCCGAAAG CTCACAAGGCGAGAGGGCTTTCTTCAGAAACCATTTACACTGGAACAACT GTCCCTTCCACCACTTATAATCCATAACGGGAGGCACTATCCACCACGGT AGCTTTCTCGCCTTAACCCAATTATTTTGAACTCCCCGCCTTTTCACCGT AAGTGCCTTTGCCTATTAAACTTTTTCTCTG
quality values	Open. Hide. 7 7 7 7 7 8 9 11 11 18 19 21 14 10 8 8 8 8 8 8 8 8 10 13 10 8 8 7 7 9 8 7 7 10 10 10 17 8 8 8 8 8 8 8 15 13 9 8 8 10 10 10 10 10 8 6 6 8 8 6 6 6 8 6 8 9 8 8 8 8 8 10 19 8 9 9 12 12 12 12 8 8 8 8 6 6 6 6 10 10 8 15 8 8 6 6 6 7 10 12 10 8 8 8 8 8 7 8 6 6 6 6 8 8 6 6 8 8 8 8 8 8 6 6 8 6 9 12 10 10 13 15 9 9 9 6 8 6 7 7 7 10 8 8 8 8 8 8 10 13 10 8 6 6 6 6 8 8 10 11 6 6 6 8 8 8 8 8 8 9 9 6 6 6 7 8 7 13 14 10 8 8 6 7 10 8 9 10 8 10 6 6 8 8 10 8 8 8 8 10 10 10 8 6 6 6 8 8 10 9 11 11 9 9 10 10 8 6 6 6 6 6 8 8 10 14 15 11 6 6 6 6 6 6 6 8 6 6 8 6 8 8 11 8 8 8 8 8 8 9 9 11 13 17 12 9 9 10 8 6 6 7 7 13 10 8 9 9 6 6 6 6 8 8 9 9 10 10 9 9 9 10 9 8 8 9 8 8 8 15 8 8 6 6 7 8 8 8 8 8 8 8 12 12 12 13 6 6 6 7 7 6 6 8 8 9 10 10 12 13 13 13 8 8 8 6 6 8 8 6 8 6 6 10 10 10 10 12 10 10 10 10 10 10 8 8 6 6 10 10 14 11 9 9 9 7 7 8 7 10 9 9 10 12 8 8 8 9 9 15 11 11 15 15 8 8 8 10 12 8 9 8 13 13 8 8 8 8 8 6 6 8 8 8 8 6 7 6 6 10 13 13 8 8 8 8 6 6 8 8 9 9 9 8 8 8 6 6 6 8 11 8 8 8 12 8 8 8 10 6 9 12 11 19 17 11 11 11 11 12 11 11 10 23 19 8 6 6 8 12 13 13 8 10 8 8 8 8 8 10 12 6 6 8 8 10 8 8 12 8 8 8 8 6 6 6 6 8 10 11 8 8 8 15 12 8 8 8 13 13 15 14 8 7 7 10 8 10 10 9 8 10 8 8 8 8 8 10 10 10 10 11 9 8 6 6 6 8 8 10 8 8 6 7 11 6 8 8 8 8 8 8 11 10 11 15 8 8 8 8 6 6 8 8 8 11 11 11 10 10 8 8 7 8 8 8 8 6 6 8 8 9 12 9 6 6 6 6 8 6 6 12 7 6 8 9 9 7 6 8 8 8 8 8 8 8 8 6 6 8 6 8 8 12 9 9 9 10 11 11 11 13 13 12 9 9 9 9 7 6 6 6 8 10 12 12 11 11 9 9 10 12 10 9 20 11 11 9 8 8 8 8 8 12 10 10 11 11 13 9 11 8 10 9 8 7 7 8 8 11 10 8 8 8 11 11 9 8 8 8 10 11 10 11 16 11 11 10 11 10 10 9 8 8 8 8 8 8 8 9 11 11 30 21 12 11 11 11 11 16 18 10 10 10 8 8 6 6 8 6 9 9 10 10 8 7 8 9 9 8 8 8 10 8 11 12 12 9 8 8 6 8 10 12 10 10 10 16 16 28 17 18 14 22 24 24 9 8 10 8 8 8 8 6 6 10 10 7 6 8 8 9 9 8 8 7 7 6 6 13 10 10 8 10 8 8 8 7 6 8 8 9 9 9 9 12 11 13 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 12 12 10 11 8 6 6 8 8 13 8 13 17 15 11 12 14 11 11 14 12 10 10 9 13 10 9 9 9 17 11 11 9 9 8 8 10 10 12 12 11 13 11 11 13 9 9 9 11 8 8 8 8 8 8 8 8 10 10 10 12 18 12 11 12 12 11 8 6 8 8 6 6 7 8 13 10 8 8 8 8 8 8 13 8 8 8 8 3 0 3 13 16 14 10 10 10 13 12 15 15 9 9 7 8 6 6 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 9 10 10 13 8 6 8 8 10 8 8 14 8 12 10 8 8 6 6 6 6 7 10 8 8 8 8 8 8 10 8 9 8 8 8 10 8 8 9 9 14 10 10 9 8 6 6 6 8 8 8 11 9 9 10 10 10 9 11 11 16 11 11 14 15 10 10 10 12 10 11 11 26 14 13 9 9 8 8 6 6 8 8 8 8 8 8 13 8 10 10 23 13 13 11 11 8 10 7 6 8 6 9 9 8 8 6 6 6 7 8 6 8 8 8 8 8 8 11 10 8 6 6 6 6 8 11 7 6 7 7 7 6 8 8 8 9 10 9 8 8 8 6 6 6 6 7 7 11 15 13 9 9 13 10 8 8 8 8 6 6 10 6 6 6 11 6 8 6 6 6 10 8 8 11 8 8 8 8	Open. Hide. 6 8 8 8 9 9 18 23 30 30 47 37 37 42 41 37 37 44 39 39 44 44 39 27 27 8 6 6 8 8 8 21 10 10 10 21 21 48 48 27 21 11 11 11 25 21 53 53 53 53 53 57 48 34 32 25 33 32 28 26 34 22 42 41 41 41 42 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 57 57 68 68 68 68 68 68 68 68 57 50 50 46 46 42 48 57 57 50 57 48 48 57 50 50 57 57 68 57 57 57 57 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 59 59 35 43 44 57 57 68 57 57 57 68 57 57 68 68 68 57 57 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 57 59 59 68 68 68 59 59 59 59 59 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 59 59 68 68 59 59 57 57 57 59 59 57 57 59 59 57 59 57 57 57 57 57 57 57 57 57 52 52 52 52 57 57 57 57 52 52 57 57 57 68 68 68 68 68 68 57 68 57 57 57 59 59 43 43 39 50 59 59 68 68 68 68 68 68 59 59 54 57 57 59 59 57 57 43 43 44 48 59 44 44 44 43 42 44 42 57 57 57 57 57 57 57 57 57 59 57 46 44 43 37 44 44 44 37 37 43 43 57 59 57 57 54 54 54 57 48 48 48 46 46 43 43 57 57 59 57 46 47 43 43 40 40 39 37 37 41 41 37 47 47 47 59 43 41 32 32 32 32 30 33 33 37 37 34 31 37 33 31 28 23 12 13 11 11 16 17 25 25 25 24 30 37 37 37 32 28 32 24 28 23 31 28 31 25 28 20 18 18 28 28 30 22 20 20 18 19 17 20 20 20 7 6 6 6 8 10 16 12 10 10 10 10 10 19 19 19 15 12 12 15 15 21 19 22 22 24 25 27 24 22 27 19 19 10 10 8 8 8 8 9 9 9 9 9 9 10 11 10 11 13 10 14 9 9 9 12 10 12 8 8 8 8 8 8 14 14 19 10 8 8 8 8 8 8 8 8 8 11 12 19 17 16 10 10 10 10 10 10 14 9 10 10 8 8 8 8 10 8 9 9 9 11 23 16 10 10 10 9 9 10 10 9 11 12 10 9 10 9 9 9 9 12 20 12 13 8 6 6 6 6 6 6 6 8 8 10 13 10 10 11 11 9 16 9 9 9 9 9 14 10 9 9 9 11 12 12 14 16 13 11 10 10 10 11 9 10 10 8 8 8 8 8 8 15 16 12 12 9 9 9 9 9 13 12 9 9 9 8 9 9 10 10 8 8 8 8 8 8 8 8 9 12 10 10 9 10 8 8 10 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no426_m04.g1 MSMg01no426_m04.g1 CHROMAT_FILE:
MSMg01no426_m04.g1 PHD_FILE: MSMg01no426_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:25 2005
         (497 letters)



>mm_chr1_181255728_181256624
          Length = 897

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgcttgctgccttatttgttgaatcattggttggtttttcaagatggctgaagcgtc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aggtgcttgctgccttatttgttgaatcattggtgggtttttcaagatggctgaagcgtc 260

                                                                       
Query: 61  catcttcagtatctacctgtataaacatggatggaggttggcaggcttttatgtagctct 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttcaggatctacctgtataaacatggatggaggttggcaggcttttatgtagctct 320

                                                                       
Query: 121 atttcttgaggtggcttaagtcccacgcagtgatgctgctcctcagcttccctgagggac 180
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 321 atttcttgaggtggcttaagtcccacgcaacgatgctgctcctcagcttccctgagggac 380

                                                                       
Query: 181 atccagagaccaagttcccgaaggaaggtgagctcatctgattcaatcaaatcaacagca 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 atccagagaccaagttcccgaaggaaggtgagctcatccgattcaatcaaatcaacagca 440

                                                                       
Query: 241 atcgtggcatgaagaggctgaggagtcaccctgcggtgtggggcactgactgaacaccgc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcatggcatgaagaggctgaggagtcaccctgcggtgtggggcactgactgaacaccgc 500

                                                                       
Query: 301 agcaagtggcttctccgggaatgacttcaacctgacaagtgacattgataaactcgtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaagtggcttctccgggaatgacttcaacctgacaagtgacattgataaactcgtcac 560

                                                                       
Query: 361 taatacgtctacttcagtatttctcaaggatggctctttggcagtcaaaaggatataccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatacgtctacttcagtatttctcaaggatggctctttggcagtcaaaaggatataccc 620

                                                                       
Query: 421 agggggctcaggcacaatacatactcctgatataccttccagattggggcaatagtctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggggctcaggcacaatacatactcctgatataccttccagattggggcaatagtctca 680

                         
Query: 481 cgaggaaggaggcc 494
           ||||||||||||||
Sbjct: 681 cgaggaaggaggcc 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information