BAC Information

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BAC

Clone NameMSMg01-426P02
Chromosome1 (Build37)
Map Location 75,445,026 - 75,445,218
singlet/doubletsinglet
Overlap genenone
Upstream geneVil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa
Downstream geneAccn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426P02.T7 (MSMg01no426_p02.b1)MSMg01-426P02.TJ (MSMg01no426_p02.g1)
ACCAG520261AG520262
length808797
length of high quality
(start - end)
452 (42 - 493)195 (77 - 271)
definitionCHROMAT_FILE: MSMg01no426_p02.b1 PHD_FILE: MSMg01no426_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:39 2005CHROMAT_FILE: MSMg01no426_p02.g1 PHD_FILE: MSMg01no426_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCAGAGCATCCGCGGAATT
CTCACCTGATGTACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAG
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ACTGGACATAGTACTACCGGATTTATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGCAACACATTCACTTAGAA
CCTCCCCCCATATTGTACTCCCTGTAAAGTGGATATTACCCCCCAACCCA
GGATACCCCACGATATCAAAAATCATTTTGGTAAACCACCTCGACAATCA
CGAAAAAATGAAGACTTGAAGTGCGGGTCCCCATATGCCTCCTTCCTTTA
AATTTGGTGTAACCTCCTCTCCTTCGTGGTACTGTCCTATCTCCCCTAAT
ACATTCCN
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACAGGATATCAGGGCAGTGGTG
GATGCTGGGGGAGACTAGGGGGCAGCTCCCACTTTCTTGGCAGAGTCCCA
GACCGAAGTAACCTTAAGAGATCAATTAAATCACCCTTTTTAAAAACCCA
GTAAAGAAAAATCAATATTGGGAGAAAAGGGAAGAAAGAAAAGGAGGGAT
GGTGGGTATGTGGTGCAGNCGCCCGCCCCGTCNCCGCTGCCGCCGTGGCC
CCGGGGGGCGGCGNCCCCCTGTTTTTTTTTTCTGTCTTTCCCCCCTTCCG
CCTGGCTCTTTGCTGTTCTCGCCTGCTGGGCTGGGCTGCGTCTCCGTTTT
CTCCTCCGCTCGTTTCCCTCCTCTTCCTTCCTTTGCCTCCTCTTCCCTCT
TTCTGTTTTTTTTCTCCCTCGTCTCTTCTGCGCTTCTCCTTCTCTCCCTC
CTTCTCTTTCTCCCTCGCCCTCCTTTTTTCCTGCTTCTTCCTCCTCCCCT
TTCTGCTCCTCCCTTTTCGCCCCTTTTTTTCTTTCCTCTTTTTCTCCGTG
CTTGTGTTGTCTCTTTCCCCTCCTCCCCCTTCCTTTCTTCTCTTTCCTTT
TTCCCCTCTCTTCTCCCTTTTCTTTCTCTTCTTTCCCCTCTCTCTTTCTC
TCTCCTTTTTTCTCTTCCTTGCTTTTTCATTCCTTTCTTTCCTTTTTCTT
GTTCGCCTCCTTTACCTCCCTTCTCCCCTTTTTTTCTCTTTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_p02.g1 MSMg01no426_p02.g1 CHROMAT_FILE:
MSMg01no426_p02.g1 PHD_FILE: MSMg01no426_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:40 2005
         (195 letters)



>mm_chr1_75444826_75445421
          Length = 596

 Score =  335 bits (173), Expect = 1e-96
 Identities = 188/193 (97%), Gaps = 1/193 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaggatatcagggcagtggtggatgctgggggagactagggggcagctcccactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaggatatcagggcagtggtggatgctgggggagactagggggcagctcccactttc 260

                                                                       
Query: 61  ttggcagagtcccagaccgaagtaaccttaagagatcaattaaatcacccttttta-aaa 119
           ||||||||||||||||||||||||||||||| | | |||||||||||||||||||  |||
Sbjct: 261 ttggcagagtcccagaccgaagtaaccttaaaaaagcaattaaatcaccctttttttaaa 320

                                                                       
Query: 120 acccagtaaagaaaaatcaatattgggagaaaagggaagaaagaaaaggagggatggtgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccagtaaagaaaaatcaatattgggagaaaagggaagaaagaaaaggagggatggtgg 380

                        
Query: 180 gtatgtggtgcag 192
           |||||||||||||
Sbjct: 381 gtatgtggtgcag 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 596
Length adjustment: 8
Effective length of query: 187
Effective length of database: 588
Effective search space:   109956
Effective search space used:   109956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)